dualContinuous          Dual-host pathogen in structured (continuous)
                        hosts populations
dualDiscrete            Dual-host pathogen in structured (discrete)
                        hosts populations
dualNone                Dual-host pathogen in homogeneous hosts
                        populations
getCumulative           Gets the cumulative number of infected hosts
                        for the full length of the simulation
getDynamic              Gets the current number of infected hosts for
                        the full length of the simulation
getHostData             Extracts specific data from a 'nosoiSim' object
getR0                   Gets R0 from a 'nosoi' simulation
getTableHosts           Extracts 'table.hosts' from a 'nosoiSim' object
getTableState           Extracts 'table.state' from a 'nosoiSim' object
getTransmissionTree     Gets the full transmission tree (phylogenetic
                        tree-like) from a 'nosoi' simulation
nosoiSim                Top-level function to use 'nosoi'.
nosoiSummary            Summarizes the epidemiological features of a
                        'nosoi' simulation
sampleTransmissionTree
                        Sample the transmission tree (phylogenetic
                        tree-like)
sampleTransmissionTreeFromExiting
                        Sample the transmission tree (phylogenetic
                        tree-like) among the exited hosts
singleContinuous        Single-host pathogen in a structured
                        (continuous) host population
singleDiscrete          Single-host pathogen in a structured (discrete)
                        host population
singleNone              Single-host pathogen in a homogeneous host
                        population
