R: Metabolite Set Enrichment Analysis for Loadings

# Metabolite Set Enrichment Analysis for Loadings

## Documentation for package ‘mseapca’ version 2.2.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

csv2list | Convert metabolite set / csv to list
fasting_mseapca | Metabolome data from a fasting mouse study
list2xml | Save compound set as XML file
msea_ora | Wrapper function for over-representation analysis (ORA)
msea_ora_range | Wrapper function for Over-Representation Analysis with p-value range estimation
msea_sub | MSEA by Subramanian et al.
ora_all | ORA using all metabolites
ora_bino | Over-representation analysis with binomial resampling adjustment
ora_det | ORA using detected metabolites
ora_est | ORA adjusting for undetected metabolites
ora_full | Over-representation analysis with full enumeration of undetected metabolite patterns
pathbank2list | Generate metabolite set list from PathBank database
pathway | Example of metabolite set list for fasting and covid19 datasets
read_pathway | Read metabolite set file (*.xml)
setlabel | Generate binary label matrix of metabolite set
ssea_ora | Single sample enrichment analysis by over representation analysis