R: Metabolomics Data Analysis Functions

# Metabolomics Data Analysis Functions

## Documentation for package ‘mrbin’ version 1.9.5

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

addToPlot | A function for adding NMR spectra to the plot list.
annotatemrbin | A function for annotating mrbin objects.
atnv | A function replacing negative values.
checkmrbin | A function for checking mrbin objects.
contMin | A function for changing plotNMR plots.
contPlus | A function for changing plotNMR plots.
createAnnotationList | A function for creating annotation lists.
createmrbin | A function for creating mrbin objects.
cropNMR | A function for cropping HSQC spectra.
dilutionCorrection | A function for scaling to individual dilution factors.
down | A function for changing plotNMR plots.
editmetabolitesmrbin | A function for editing metabolite identities.
editmrbin | A function for editing mrbin objects.
fia | A function identifying features of importance.
getEnv | A function for saving the package environment.
intMin | A function for changing plotNMR plots.
intPlus | A function for changing plotNMR plots.
left | A function for changing plotNMR plots.
logTrafo | A function for log transforming data.
metadatamrbin | A function for interactively editing metadata of mrbin objects.
mrbin | A function setting the parameters and performing binning and data processing
mrbinrun | A function performing all data read and processing steps.
mrheatmap | A function for plotting heatmaps.
mrplot | A function for plotting NMR spectra.
plotMultiNMR | A function for plotting NMR spectra.
plotNMR | A function for plotting NMR spectra.
plotPCA | A function for plotting PCA plots.
plotResults | A function for plotting quality indicators, including PCA plots.
PQNScaling | A function for PQN scaling.
predictWrapper | A function returning predicted values for use with the fia function.
printParameters | A function for printing parameters to the screen.
putToEnv | A function for changing and adding variables in the package environment.
readBruker | A function for reading Bruker NMR spectra.
recreatemrbin | A function recreating parameters from previous runs.
removeFromPlot | A function for removing NMR spectra from the plot list.
removeNoise | A function for removing bins below noise level.
removeSpectrum | A function for removing a spectrum.
resetEnv | A parameter resetting function
right | A function for changing plotNMR plots.
setCurrentSpectrum | A function for interactively setting the current spectrum.
setDilutionFactors | A function for setting dilution factors.
setNoiseLevels | A function for setting and plotting noise levels.
setOffset | A function for changing plotNMR plots.
setParam | A function setting parameters and checking for consistency.
timeStampMrbin | A function for time stamping mrbin objects.
trimZeros | A function for trimming zero-values bins.
unitVarianceScaling | A function for scaling to unit variance.
up | A function for changing plotNMR plots.
zoom | A function for changing plotNMR plots.
zoomIn | A function for changing plotNMR plots.
zoomOut | A function for changing plotNMR plots.