Distance                Function to calculate distance between two
                        vectors
EDNN                    Encoder decoder neural network (EDNN) function
Rank                    Ranking a vector
RepRandomWalk           Repetitive Fixed-length (weighted) random walk
                        algorithm
WeightdRandomWalk       Weighted Random Walk algorithm
as.igraph               Convert mnda graph data to igraph
as.mnda.graph           Convert adjacency matrix to mnda graph data
ednn_IOprepare          Preparing the input and output of the EDNN for
                        a multiplex graph
example_data            Example Data
mnda_distance_test_isn
                        Test the embedding distances of local neighbors
                        change between the two conditions for ISNs.
mnda_embedding          Calculate the embedding space for a multiplex
                        network
mnda_embedding_2layer   Calculate the embedding space for a two layer
                        multiplex network
mnda_node_detection_2layer
                        Detecting the nodes whose local neighbors
                        change bweteen the two conditions.
mnda_node_distance      Detecting the nodes whose local neighbors
                        change between the two conditions for ISNs.
network_gen             Multiplex Network Generation
p_val_norm              Calculate p.value for x given a Gaussian null
                        pdf
p_val_rank              Calculate p.value for x given a null pdf using
                        ranks
subgraph_difference_plot
                        Visualization of a difference subgroup using a
                        circular graph
subgraph_plot           Visualization of a subgroup using a circular
                        graph
