R: Modeling Multivariate Origins Determinants - Evolutionary Lineages in Ecology

# Modeling Multivariate Origins Determinants - Evolutionary Lineages in Ecology

## Documentation for package ‘mmodely’ version 0.2.5

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

average.fit.models | Calculate a weighted average of pglm
calc.q2n.ratio | Calculate the ratio of fit predictor variables to sample size
cept | Include all variables except ...
comp.data | Comparative Data
compare.data.gs.vs.tree.tips | Find data being dropped by mismatches to the tree
correct.AIC | Correct AIC
count.mod.vars | Count the predictor variables in a model
ct.possible.models | Count all possible model combinations
drop.na.data | Drop any rows with NA values
fit.1ln.rprt | Report a model fit in a single line of text output
get.mod.clmns | Get model columns
get.mod.outcome | Get the outcome variable from a model string
get.mod.vars | Get model variable names
get.model.combos | All combinations of predictor variables
get.pgls.coefs | Get coeficients from a list of PGLS model-fits (from each selected subset)
get.phylo.stats | Get tree statistics for a trait
gs.check | Check "Genus species" name formatting
gs.names.mismatch.check | Check "Genus species" name formatting
gs.rename | Rename the Genus species information in a data frame
interpolate | Interpolate missing data in a data frame
missing.data | Report missing values in a dataframe
missing.fill.in | Fill in missing values in a dataframe with a secondary source
pgls.iter | Iterate through PGLS estimations
pgls.iter.stats | Statistics from PGLS runs
pgls.print | Print the results of a PGLS model fit
pgls.report | Report PGLS results as a table
pgls.wrap | A Wrapper for PGLS model
plot.confound.grid | Plot a grid of x y plots split by a confounder z
plot.pgls.iters | Plot the PGLS iterations
plot.pgls.R2AIC | Plot (R2 vs AIC) results of a collection of fit PGLS models
plot.transformed.phylo | Plot a transformed phylogenetic tree
plot.xy.ab.p | An x/y scatterplot with a linear regression line and p-value
select.best.models | Get the best model from list of PGLS model fits
sparge.modsel | Coeficients distribution [sparge] plot of models selected from each subset
trim.phylo | Trim a phylogenetic tree using Genus species names
variable.importance | Calculate a weighted average of pglm
weight.IC | Get IC weights