AIC.mmkin               Calculate the AIC for a column of an mmkin
                        object
CAKE_export             Export a list of datasets format to a CAKE
                        study file
D24_2014                Aerobic soil degradation data on 2,4-D from the
                        EU assessment in 2014
DFOP.solution           Double First-Order in Parallel kinetics
FOCUS_2006_A            Datasets A to F from the FOCUS Kinetics report
                        from 2006
FOCUS_2006_DFOP_ref_A_to_B
                        Results of fitting the DFOP model to Datasets A
                        to B of FOCUS (2006)
FOCUS_2006_FOMC_ref_A_to_F
                        Results of fitting the FOMC model to Datasets A
                        to F of FOCUS (2006)
FOCUS_2006_HS_ref_A_to_F
                        Results of fitting the HS model to Datasets A
                        to F of FOCUS (2006)
FOCUS_2006_SFO_ref_A_to_F
                        Results of fitting the SFO model to Datasets A
                        to F of FOCUS (2006)
FOMC.solution           First-Order Multi-Compartment kinetics
HS.solution             Hockey-Stick kinetics
IORE.solution           Indeterminate order rate equation kinetics
NAFTA_SOP_Appendix_B    Example datasets from the NAFTA SOP published
                        2015
NAFTA_SOP_Attachment    Example datasets from Attachment 1 to the NAFTA
                        SOP published 2015
SFO.solution            Single First-Order kinetics
SFORB.solution          Single First-Order Reversible Binding kinetics
[.mmkin                 Subsetting method for mmkin objects
add_err                 Add normally distributed errors to simulated
                        kinetic degradation data
anova.saem.mmkin        Anova method for saem.mmkin objects
aw                      Calculate Akaike weights for model averaging
check_failed            Check if fit within an mhmkin object failed
confint.mkinfit         Confidence intervals for parameters of mkinfit
                        objects
create_deg_func         Create degradation functions for known
                        analytical solutions
dimethenamid_2018       Aerobic soil degradation data on dimethenamid
                        and dimethenamid-P from the EU assessment in
                        2018
ds_mixed                Synthetic data for hierarchical kinetic
                        degradation models
endpoints               Function to calculate endpoints for further use
                        from kinetic models fitted with mkinfit
experimental_data_for_UBA_2019
                        Experimental datasets used for development and
                        testing of error models
f_time_norm_focus       Normalisation factors for aerobic soil
                        degradation according to FOCUS guidance
focus_soil_moisture     FOCUS default values for soil moisture contents
                        at field capacity, MWHC and 1/3 bar
get_deg_func            Retrieve a degradation function from the mmkin
                        namespace
hierarchical_kinetics   Hierarchical kinetics template
illparms                Method to get the names of ill-defined
                        parameters
ilr                     Function to perform isometric log-ratio
                        transformation
intervals.saem.mmkin    Confidence intervals for parameters in
                        saem.mmkin objects
llhist                  Plot the distribution of log likelihoods from
                        multistart objects
loftest                 Lack-of-fit test for models fitted to data with
                        replicates
logLik.mkinfit          Calculated the log-likelihood of a fitted
                        mkinfit object
logLik.saem.mmkin       logLik method for saem.mmkin objects
logistic.solution       Logistic kinetics
lrtest.mkinfit          Likelihood ratio test for mkinfit models
max_twa_parent          Function to calculate maximum time weighted
                        average concentrations from kinetic models
                        fitted with mkinfit
mccall81_245T           Datasets on aerobic soil metabolism of 2,4,5-T
                        in six soils
mean_degparms           Calculate mean degradation parameters for an
                        mmkin row object
mhmkin                  Fit nonlinear mixed-effects models built from
                        one or more kinetic degradation models and one
                        or more error models
mixed                   Create a mixed effects model from an mmkin row
                        object
mkin_long_to_wide       Convert a dataframe from long to wide format
mkin_wide_to_long       Convert a dataframe with observations over time
                        into long format
mkinds                  A dataset class for mkin
mkindsg                 A class for dataset groups for mkin
mkinerrmin              Calculate the minimum error to assume in order
                        to pass the variance test
mkinerrplot             Function to plot squared residuals and the
                        error model for an mkin object
mkinfit                 Fit a kinetic model to data with one or more
                        state variables
mkinmod                 Function to set up a kinetic model with one or
                        more state variables
mkinparplot             Function to plot the confidence intervals
                        obtained using mkinfit
mkinplot                Plot the observed data and the fitted model of
                        an mkinfit object
mkinpredict             Produce predictions from a kinetic model using
                        specific parameters
mkinresplot             Function to plot residuals stored in an mkin
                        object
mmkin                   Fit one or more kinetic models with one or more
                        state variables to one or more datasets
multistart              Perform a hierarchical model fit with multiple
                        starting values
nafta                   Evaluate parent kinetics using the NAFTA
                        guidance
nlme.mmkin              Create an nlme model for an mmkin row object
nlme_function           Helper functions to create nlme models from
                        mmkin row objects
nobs.mkinfit            Number of observations on which an mkinfit
                        object was fitted
parms                   Extract model parameters
parplot                 Plot parameter variability of multistart
                        objects
plot.mixed.mmkin        Plot predictions from a fitted nonlinear mixed
                        model obtained via an mmkin row object
plot.mkinfit            Plot the observed data and the fitted model of
                        an mkinfit object
plot.mmkin              Plot model fits (observed and fitted) and the
                        residuals for a row or column of an mmkin
                        object
plot.nafta              Plot the results of the three models used in
                        the NAFTA scheme.
read_spreadsheet        Read datasets and relevant meta information
                        from a spreadsheet file
residuals.mkinfit       Extract residuals from an mkinfit model
saem                    Fit nonlinear mixed models with SAEM
schaefer07_complex_case
                        Metabolism data set used for checking the
                        software quality of KinGUI
set_nd_nq               Set non-detects and unquantified values in
                        residue series without replicates
sigma_twocomp           Two-component error model
status                  Method to get status information for fit array
                        objects
summary.mkinfit         Summary method for class "mkinfit"
summary.mmkin           Summary method for class "mmkin"
summary.nlme.mmkin      Summary method for class "nlme.mmkin"
summary.saem.mmkin      Summary method for class "saem.mmkin"
summary_listing         Display the output of a summary function
                        according to the output format
synthetic_data_for_UBA_2014
                        Synthetic datasets for one parent compound with
                        two metabolites
test_data_from_UBA_2014
                        Three experimental datasets from two water
                        sediment systems and one soil
transform_odeparms      Functions to transform and backtransform
                        kinetic parameters for fitting
update.mkinfit          Update an mkinfit model with different
                        arguments
