Author: Jérôme Mariette, Céline Brouard, Rémi Flamary and Nathalie Vialaneix

# Installation instruction for mixKernel

#### Jérôme Mariette, Céline Brouard, Rémi Flamary and Nathalie Vialaneix

#### 19 avril, 2025

This vignette provide installation for `mixKernel` instructions.

## Installation of python dependencies

The following python modules are required for the functions performing feature selection in `mixKernel`: autograd, scipy, sklearn, numpy

    pip3 install autograd
    pip3 install scipy
    pip3 install sklearn
    pip3 install numpy

## Installation of Bioconductor dependencies

Two Bioconductor packages are required for `mixKernel` installation: `mixOmics` and `phyloseq`:

    install.packages("BiocManager")
    BiocManager::install("mixOmics")
    BiocManager::install("phyloseq")

## mixKernel installation

Finally the installation is completed with:

    install.packages("mixKernel")