calculate_bootstrap_ci
                        Calculate Bootstrap Confidence Intervals for R
                        Estimates
calculate_r_estimates   Calculate Reproduction Number Estimates
calculate_si_probability_matrix
                        Calculate Serial Interval Probability Matrix
calculate_truncation_correction
                        Calculate Right-Truncation Correction Factors
conv_tri_dist           Convolution of the triangular distribution with
                        the mixture component density (continuous case)
create_day_diff_matrix
                        Create Day Difference Matrix
f0                      Calculate f0 for Different Components
f_gam                   Calculate serial interval mixture density
                        assuming underlying gamma distribution
f_norm                  Calculate serial interval mixture density
                        assuming underlying normal distribution
flower                  Calculate flower for Different Components
fupper                  Calculate fupper for Different Components
generate_case_bootstrap
                        Generate Bootstrap Sample of Case Incidence
generate_synthetic_epidemic
                        Generate Synthetic Epidemic Data Using the
                        Renewal Equation
integrate_component     Integrate Serial Interval Component Functions
                        for Likelihood Calculation
integrate_components_wrapper
                        Compute Serial Interval Component Integrals for
                        All Transmission Routes
plot_si_fit             Visualize Serial Interval Distribution Fit to
                        Outbreak Data
si_estim                Estimate Serial Interval Distribution Using the
                        Vink Method
smooth_estimates        Apply Moving Average Smoothing to R Estimates
wallinga_lipsitch       Estimate Time-Varying Case Reproduction Number
                        Using Wallinga-Lipsitch Method
weighted_var            Calculate Sample Weighted Variance
wt_loglik               Calculate Weighted Negative Log-Likelihood for
                        Gamma Distribution Parameters
