R: Basic Biological Sequence Handling

# Basic Biological Sequence Handling

## Documentation for package ‘microseq’ version 2.1.7

- DESCRIPTION file

## Help Pages

backTranslate | Replace amino acids with codons
findGenes | Finding coding genes
findOrfs | Finding ORFs in genomes
findrRNA | Finding rRNA genes
gff2fasta | Retrieving annotated sequences
gregexpr | Extended 'gregexpr' with substring retrieval
iupac2regex | Ambiguity symbol conversion
lorfs | Longest ORF
microseq | Basic Biological Sequence Analysis
msa2mat | Convert alignment to matrix
msalign | Multiple alignment
msaTrim | Trimming multiple sequence alignments
muscle | Multiple alignment using MUSCLE
orfLength | Length of ORF
orfSignature | Signature for each ORF
readFasta | Read and write FASTA files
readFastq | Read and write FASTQ files
readGFF | Reading and writing GFF-tables
regex2iupac | Ambiguity symbol conversion
reverseComplement | Reverse-complementation of DNA
translate | Translation according to the standard genetic code
writeFasta | Read and write FASTA files
writeFastq | Read and write FASTQ files
writeGFF | Reading and writing GFF-tables