backTranslate	backTranslate
findGenes	findGenes
findOrfs	findOrfs
findrRNA	findrRNA
gff2fasta	gff2fasta
gregexpr	gregexpr
iupac2regex	iupac2regex
lorfs	lorfs
microseq	microseq
msa2mat	msa2mat
msalign	msalign
msaTrim	msaTrim
muscle	muscle
orfLength	orfLength
orfSignature	orfSignature
readFasta	readFasta
readFastq	readFastq
readGFF	readGFF
regex2iupac	iupac2regex
reverseComplement	reverseComplement
translate	translate
writeFasta	readFasta
writeFastq	readFastq
writeGFF	readGFF
