demo_DMRfinder_DMRs     DMRfinder Output Demo Dataset
demo_DMRfinder_rate_combine
                        DMRfinder Methyrate Demo Dataset
demo_biseq_DMR          BiSeq Output Demo Dataset
demo_biseq_methyrate    BiSeq Methyrate Demo Dataset
demo_desq_out           DESeq Output Dataset
demo_methylkit_met_all
                        Methyrate output dataset from methylKit
demo_methylkit_methyrate
                        Methyrate Dataset
demo_metilene_input     Metilene Methyrate Demo Dataset
demo_metilene_out       Metilene Demo Output Dataset
evalue_buildin_sql      Build-in data process function
evalue_buildin_var_fmt_nm
                        Build-in check file format function Perform the
                        format check and data clean for the "metilene"
                        or "biseq", "DMRfinder" or "methylKit" method
                        correspondingly.
metevalue.DMRfinder     Calculate E-value of the DMRfinder data format
metevalue.DMRfinder.chk
                        Check the DMRfinder data format
metevalue.RNA_general   A general method to calculate the e-value for
                        RNA-seq data.
metevalue.biseq         Calculate E-value of the BiSeq data format
metevalue.biseq.chk     Check the BiSeq data format
metevalue.methylKit     Calculate E-value of the methylKit data format
metevalue.methylKit.chk
                        Check the methylKit data format
metevalue.metilene      Calculate E-value of the Metilene data format
metevalue.metilene.chk
                        Check the Metilene data format
varevalue.metilene      Calculate E-value of the Metilene data
varevalue.single_general
                        A general method to calculate the e-value for
                        other DNA methylation tools not described
                        above. The input data is the DNA methylation
                        rates using the similar format with Metilene.
