Package: markerpen
Type: Package
Title: Marker Gene Detection via Penalized Principal Component Analysis
Version: 0.1.2
Date: 2025-12-14
Authors@R: c(
    person("Yixuan", "Qiu",
           email = "yixuan.qiu@cos.name",
           role = c("aut", "cre")),
    person("Jiebiao", "Wang", role = "aut"),
    person("Jing", "Lei", role = "aut"),
    person("Kathryn", "Roeder", role = "aut"))
Description: Implementation of the 'MarkerPen' algorithm, short for marker gene detection
    via penalized principal component analysis, described in the paper by Qiu, Wang, Lei,
    and Roeder (2021, <doi:10.1093/bioinformatics/btab257>). 'MarkerPen' is a semi-supervised
    algorithm for detecting marker genes by combining prior marker information with bulk
    transcriptome data.
License: GPL
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.3.0)
Imports: Rcpp (>= 1.0.1), RSpectra, stats
LinkingTo: Rcpp, RcppEigen, RSpectra
Suggests: knitr, rmarkdown, prettydoc, scales
VignetteBuilder: knitr, rmarkdown
RoxygenNote: 7.3.2
NeedsCompilation: yes
Packaged: 2025-12-14 12:34:17 UTC; qyx
Author: Yixuan Qiu [aut, cre],
  Jiebiao Wang [aut],
  Jing Lei [aut],
  Kathryn Roeder [aut]
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Repository: CRAN
Date/Publication: 2025-12-14 13:30:02 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-27 18:11:39 UTC; unix
Archs: markerpen.so.dSYM
