# Generated by roxygen2: do not edit by hand

S3method(logicDT,bagging)
S3method(logicDT,boosting)
S3method(logicDT,default)
S3method(logicDT,formula)
S3method(logicDT.bagging,default)
S3method(logicDT.bagging,formula)
S3method(logicDT.boosting,default)
S3method(logicDT.boosting,formula)
S3method(plot,logicDT)
S3method(plot,vim)
S3method(predict,"4pl")
S3method(predict,genetic.logicDT)
S3method(predict,linear)
S3method(predict,linear.logic)
S3method(predict,logic.bagged)
S3method(predict,logic.boosted)
S3method(predict,logicDT)
S3method(print,logic.bagged)
S3method(print,logic.boosted)
S3method(print,logicDT)
S3method(print,vim)
export(bestBoostingIter)
export(calcAUC)
export(calcBrier)
export(calcDev)
export(calcMSE)
export(calcMis)
export(calcNCE)
export(calcNRMSE)
export(cooling.schedule)
export(cv.prune)
export(fancy.plot)
export(fit4plModel)
export(fitLinearBoostingModel)
export(fitLinearLogicModel)
export(fitLinearModel)
export(get.ideal.penalty)
export(getDesignMatrix)
export(gxe.test)
export(gxe.test.boosting)
export(importance.test.boosting)
export(logicDT)
export(logicDT.bagging)
export(logicDT.boosting)
export(partial.predict)
export(prune)
export(prune.path)
export(refitTrees)
export(splitSNPs)
export(tree.control)
export(vim)
importFrom(glmnet,cv.glmnet)
importFrom(glmnet,glmnet)
importFrom(glmnet,predict.glmnet)
importFrom(grDevices,gray)
importFrom(grDevices,hcl.colors)
importFrom(graphics,abline)
importFrom(graphics,dotchart)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,strheight)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(stats,aggregate)
importFrom(stats,anova)
importFrom(stats,ave)
importFrom(stats,binomial)
importFrom(stats,fisher.test)
importFrom(stats,gaussian)
importFrom(stats,glm)
importFrom(stats,model.frame)
importFrom(stats,model.matrix)
importFrom(stats,model.response)
importFrom(stats,optim)
importFrom(stats,pchisq)
importFrom(stats,pf)
importFrom(stats,predict.glm)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(utils,combn)
importFrom(utils,flush.console)
useDynLib(logicDT,calcAUC_)
useDynLib(logicDT,fit4plModelWithGroups_)
useDynLib(logicDT,fit4plModel_)
useDynLib(logicDT,fitLinearModel_)
useDynLib(logicDT,fitPET_)
useDynLib(logicDT,fitPETs_)
useDynLib(logicDT,geneticProgramming_)
useDynLib(logicDT,getDesignMatrix_)
useDynLib(logicDT,greedySearch_)
useDynLib(logicDT,predictEnsemble_)
useDynLib(logicDT,predictGP_)
useDynLib(logicDT,predict_)
useDynLib(logicDT,prune_)
useDynLib(logicDT,simplifyTree_)
useDynLib(logicDT,simulatedAnnealing_)
useDynLib(logicDT,vim_permutation_)
