as.data.frame.lfq_data
                        Convert lfq_data to long-format tibble
as_lfq_data             Coerce to lfq_data
augment.lfq_fit         Augment data with fitted values from an lfq_fit
                        object
autoplot.lfq_fit        Plot lineage frequency model results
autoplot.lfq_forecast   Plot a lineage frequency forecast
backtest                Rolling-origin backtesting of lineage frequency
                        models
cdc_ba2_transition      CDC SARS-CoV-2 variant proportions: BA.1 to
                        BA.2 transition (US, 2022)
cdc_sarscov2_jn1        CDC SARS-CoV-2 variant proportions: JN.1
                        emergence (US, 2023-2024)
coef.lfq_fit            Extract coefficients from a lineage frequency
                        model
collapse_lineages       Collapse rare lineages into an aggregate group
compare_models          Compare model engines from backtest scores
filter_sparse           Filter sparse time points and lineages
fit_model               Fit a lineage frequency model
forecast                Forecast lineage frequencies (generic)
forecast.lfq_fit        Forecast lineage frequencies
glance.lfq_fit          Glance at an lfq_fit object
growth_advantage        Extract growth advantage estimates
influenza_h3n2          Simulated influenza A/H3N2 clade frequency data
is_lfq_data             Test if an object is an lfq_data object
lfq_advantage           Pipe-friendly growth advantage extraction
lfq_data                Create a lineage frequency data object
lfq_engines             List available modeling engines
lfq_fit                 Pipe-friendly model fitting
lfq_forecast            Pipe-friendly forecasting
lfq_score               Pipe-friendly backtesting + scoring
lfq_stan_available      Check if 'CmdStan' backend is available
lfq_summary             Convert lfq_fit results to a summary tibble
lfq_version             Package version and system information
plot_backtest           Plot backtest scores
print.lfq_fit           Print a lineage frequency model
read_lineage_counts     Read lineage count data from a CSV file
register_engine         Register a custom modeling engine
sarscov2_us_2022        Simulated SARS-CoV-2 variant frequency data
                        (US, 2022)
score_forecasts         Score backtest forecast accuracy
sequencing_power        Sequencing power analysis
simulate_dynamics       Simulate lineage frequency dynamics
summarize_emerging      Summarize emerging lineages
summary.lfq_fit         Summarise a lineage frequency model
tidy.lfq_fit            Tidy an lfq_fit object
unregister_engine       Remove a registered engine
