Package: limorhyde2
Type: Package
Title: Quantify Rhythmicity and Differential Rhythmicity in Genomic
        Data
Version: 0.1.1
Authors@R: c(
  person('Jake', 'Hughey', , 'jakejhughey@gmail.com', c('aut', 'cre')),
  person('Dora', 'Obodo', , 'dora.obodo@vanderbilt.edu', 'aut'),
  person('Elliot', 'Outland', , 'ehoutland@gmail.com', 'aut'))
Description: Fit linear models based on periodic splines, moderate model
  coefficients using multivariate adaptive shrinkage, then compute properties of
  the moderated curves.
URL: https://limorhyde2.hugheylab.org,
        https://github.com/hugheylab/limorhyde2
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Depends: R (>= 3.6)
Imports: abind (>= 1.4-5), ashr (>= 2.2-54), checkmate (>= 2.0.0),
        data.table (>= 1.12.8), DESeq2 (>= 1.30.0), foreach (>= 1.5.0),
        HDInterval (>= 0.2.2), iterators (>= 1.0.12), limma (>=
        3.42.2), mashr (>= 0.2.50), pbs (>= 1.1), zeallot (>= 0.1.0)
Suggests: cowplot (>= 1.1.1), knitr, doParallel (>= 1.0.15), ggplot2
        (>= 3.3.5), glue (>= 1.6.1), rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-01-20 10:38:03 UTC; jakehughey
Author: Jake Hughey [aut, cre],
  Dora Obodo [aut],
  Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Repository: CRAN
Date/Publication: 2026-01-20 10:50:02 UTC
Built: R 4.6.0; ; 2026-04-28 19:00:19 UTC; unix
