Dprime                  Get the standardized composite D'.
format_lddf             Format an element of 'mldest()' or 'sldest()'
                        into an upper-triangular matrix.
get_prob_array          Obtain the distribution of genotypes given
                        haplotype frequencies under HWE
gl_to_gp                Normalize genotype likelihoods to posterior
                        probabilities.
glike                   Genotype log-likelihoods from 'uit'
gp                      Posterior probabilities from 'uit'
is.lddf                 Tests if an argument is a 'lddf' object.
ldest                   Pairwise LD estimation in polyploids.
ldest_comp              Estimates of composite pairwise LD based either
                        on genotype estimates or genotype likelihoods.
ldest_hap               Estimate haplotypic pair-wise LD using either
                        genotypes or genotype likelihoods.
ldfast                  Fast bias-correction for LD Estimation
ldshrink                Obtain shrinkage estimates of correlation from
                        output of 'mldest()' or 'sldest()'.
mldest                  Estimate all pair-wise LD's in a collection of
                        SNPs using genotypes or genotype likelihoods.
pbnorm_dist             Returns distribution of proportional bivariate
                        normal.
plot.lddf               Plot the output of 'mldest()' or 'sldest()'
                        using 'corrplot()'
pvcalc                  Calculate prior variances from a matrix of
                        prior genotype probabilities.
slcor                   Sliding window correlation
sldest                  Sliding window LD estimation
uit                     Updog fits on the data from Uitdewilligen et.
                        al. (2013)
zshrink                 Shrinks Fisher-z transformed correlation
                        estimates and returns resulting correlation
                        estimates.
