R: Kernel Based Regression Models

# Kernel Based Regression Models

## Documentation for package ‘krm’ version 2022.10-17

- DESCRIPTION file

## Help Pages

aa.prop.list | Amino Acid Properties
aa2arabic | Read a Fasta Sequence File
alignment2count | Functions Related to Sequence Alignment
alignment2trancount | Functions Related to Sequence Alignment
arabic2arabicFile | Read a Fasta Sequence File
arabic2fastaFile | Read a Fasta Sequence File
calcPairwiseIdentity | Functions Related to Sequence Alignment
chi.norm | A Transformation of Chi-squared Random Variable
cloud9 | 9-Component Mixture Dirichlet Prior for Protein Sequences
ddirichlet | Functions related to mixture Dirichlet distribution
dmdirichlet | Functions related to mixture Dirichlet distribution
fastaFile2arabicFile | Read a Fasta Sequence File
getSeqKernel | Protein Sequence Kernels
hmmMargLlik | Functions related to profile HMM
krm | Kernel-based Regression Models
krm.most | Kernel-based Regression Model Maximum of adjusted Score Test
krm.score.test | Adjusted Score Test
logIntegrateDirichlet | Functions related to mixture Dirichlet distribution
logIntegrateMixDirichlet | Functions related to mixture Dirichlet distribution
modifyDirichlet | Functions related to mixture Dirichlet distribution
rdirichlet | Functions related to mixture Dirichlet distribution
readArabicFile | Read a Fasta Sequence File
readBlockFile | Read a Fasta Sequence File
readFastaFile | Read a Fasta Sequence File
readPriorFromFile | Functions related to profile HMM
readSelexAsMatrix | Read a Fasta Sequence File
readSelexFile | Read a Fasta Sequence File
removeGap | Functions Related to Sequence Alignment
rmdirichlet | Functions related to mixture Dirichlet distribution
selexFile2arabicFile | Read a Fasta Sequence File
sim.liu.2007 | Simulate sDataset
sim.liu.2008 | Simulate sDataset
string2arabic | Read a Fasta Sequence File
stringList2arabicFile | Read a Fasta Sequence File
writeFastaFile | Read a Fasta Sequence File