connected_component     Group connected samples
create_protein_list     Creating a list of matrices of fragment ion
                        intensities for all proteins
create_protein_table    Protein quantification for a list of proteins
extract_annotation      Protein annotation extraction
fast_MaxLFQ             The MaxLFQ algorithm
fast_preprocess         Data filtering and normalization
fast_read               Reading data from an input file
long_format_to_iq_format
                        Long format input data to iq format
maxLFQ                  The MaxLFQ algorithm for protein quantification
meanInt                 The meanInt algorithm for protein
                        quantification
median_polish           A wrapper for the R implementation of the
                        median polish algorithm
plot_protein            Plotting the underlying quantitative data for a
                        protein
preprocess              Data preprocessing for protein quantification
process_iq_format       Process data in the iq format
process_long_format     Long format to a wide format table using the
                        MaxLFQ algorithm
process_matrix          Process individual matrix
process_wide_format     Merging rows with identical values in a
                        particular column in a table
rescale                 Rescale relative quantification
spikeins                An example dataset of 12 spike-in proteins
topN                    The topN algorithm for protein quantification
