R: Analysing Inbreeding Based on Genetic Markers

# Analysing Inbreeding Based on Genetic Markers

## Documentation for package ‘inbreedR’ version 0.3.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

inbreedR-package | inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
bodyweight | Oldfield mouse bodyweight data
check_data | Checks the data for consistency with the inbreedR working format.
convert_raw | Genotype format converter
g2_microsats | Estimating g2 from microsatellite data
g2_snps | Estimating g2 from larger datasets, such as SNPs
HHC | Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH)
inbreedR | inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
MLH | Calculate multilocus heterozygosity (MLH)
mouse_msats | Oldfield mouse microsatellite data
mouse_snps | Oldfield mouse SNP data
plot.inbreed | Plot an inbreed object
print.inbreed | Print an inbreed object
r2_hf | Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f)
r2_Wf | Expected r2 between inbreeding level (f) and fitness (W)
simulate_g2 | Simulate g2
simulate_r2_hf | Calculates the expected squared correlation between heteorzygosity and inbreeding for simulated marker sets
sMLH | Calculate multilocus heterozygosity (MLH)