R: Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

# Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

## Documentation for package ‘imsig’ version 1.1.3

- DESCRIPTION file
- Package README

## Help Pages

corr_matrix | Correlation matrix
example_cli | Example clinical data file for survival analysis with ImSig
example_data | Example transcriptomics data
feature_select | Feature selection of signature genes
gene_stat | General stastitics of ImSig analysis
imsig | Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data
imsig_survival | Survival analysis based on relative abundance of immune infiltration estimated by ImSig
plot_abundance | Plot relative abundance of immune cells
plot_network | Network graph of ImSig genes
plot_survival | Forest plot of survial analysis by ImSig
pp_exp | Pre-processing expression matrix
pp_sig | Pre-processing ImSig file
sig | ImSig genes