R: A Comprehensive Toolkit for Clinical HLA Informatics

# A Comprehensive Toolkit for Clinical HLA Informatics

## Documentation for package ‘immunogenetr’ version 1.3.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

ambiguity_table_to_GLstring | ambiguity_table_to_GLstring
GLstring_expand_longer | GLstring_expand_longer
GLstring_genes | GLstring_genes
GLstring_genes_expanded | GLstring_genes_expanded
GLstring_gene_copies_combine | GLstring_gene_copies_combine
GLstring_genotype_ambiguity | GLstring_genotype_ambiguity
GLstring_regex | GLstring_regex
GLstring_to_ambiguity_table | GLstring_to_ambiguity_table
Haplotype_frequencies | Ten HLA-A~C~B~DRB3/4/5~DRB1~DQA1~DQB1~DPA1~DPB1 haplotypes and their frequencies in the global population.
HLA_columns_to_GLstring | HLA_columns_to_GLstring
HLA_column_repair | HLA_column_repair
HLA_dictionary | Data on HLA alleles in the 2008 HLA dictionary
HLA_match_number | HLA_match_number
HLA_match_summary_HCT | HLA_match_summary_HCT
HLA_mismatched_alleles | HLA_mismatched_alleles
HLA_mismatch_alleles | HLA_mismatch_alleles
HLA_mismatch_base | HLA_mismatch_base
HLA_mismatch_logical | HLA_mismatch_logical
HLA_mismatch_number | HLA_mismatch_number
HLA_prefix_add | HLA_prefix_add
HLA_prefix_remove | HLA_prefix_remove
HLA_truncate | HLA_truncate
HLA_typing_1 | Synthetic HLA typing data for 10 individuals for the HLA-A, B, C, DRB1, DRB3/4/5, DQB1, DQA1, DPB1 and DPA1 loci.
HLA_typing_LIS | Synthetic HLA typing data for 10 individuals for the HLA-A, B, C, DRB1, DRB3, DRB4, DRB5, DQB1, DQA1, DPB1 and DPA1 loci. Data formatted to resemble a HistoTrac table.
HLA_validate | HLA_validate
mismatch_table_2010 | Consensus mismatch numbers for every possible allele combination at a single locus, from the 2010 publication.
mismatch_table_2016 | Consensus mismatch numbers for every possible allele combination at a single locus, from the 2016 publication.
read_HML | read_HML