# Generated by roxygen2: do not edit by hand

export(convert_bam_to_rle)
export(convert_rle_to_df)
export(create_high_nucleotide_content)
export(create_mappability_profile)
export(plot_cov)
export(predict_iimi)
export(train_iimi)
import(utils)
importFrom(Biostrings,letterFrequencyInSlidingView)
importFrom(GenomicAlignments,readGAlignmentPairs)
importFrom(GenomicAlignments,readGAlignments)
importFrom(IRanges,coverage)
importFrom(MTPS,cv.glmnet2)
importFrom(R.utils,seqToIntervals)
importFrom(Rdpack,reprompt)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,scanBam)
importFrom(caret,createFolds)
importFrom(data.table,data.table)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,summarise)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(mltools,sparsify)
importFrom(randomForest,randomForest)
importFrom(stats,model.matrix)
importFrom(stats,predict)
importFrom(stats,setNames)
importFrom(stringr,fixed)
importFrom(stringr,str_split)
importFrom(xgboost,xgb.load.raw)
importFrom(xgboost,xgboost)
