apply.scaling           Apply scaling factors
calculate.cis.matrix    Calculate consensus integrative correlation
                        matrix
calculate.integrative.similarity.matrix
                        Calculate integrative similarity matrix
calculate.scaling       Calculate scaling factors
cluster.patients        Clustering to find patient subtypes
combine.integrative.features
                        Combine iSubGen integrative features
create.autoencoder      Create an autoencoder for dimensionality
                        reduction
create.autoencoder.irf.matrix
                        Create matrix of independent reduced features
load.molecular.aberration.data
                        Load molecular aberration data
read.scaling.factors    Read scaling factors from file
write.scaling.factors   Write scaling factors to file
