R: Calculation of Covariance Between Markers for Half-Sib Families

# Calculation of Covariance Between Markers for Half-Sib Families

## Documentation for package ‘hscovar’ version 0.4.2

- DESCRIPTION file
- Package NEWS

## Help Pages

AR1 | Correlation matrix of an autoregressive model of order 1
calcvar | Variance of estimator
coeff.beta.k | Ratio of expected value to variance of estimator
CovarMatrix | Calculation of covariance matrices from maternal and paternal LD
CovMat | Calculation of covariance or correlation matrix
ExpectMat | Expected value of paternally inherited allele
H.sire | testdata: sire haplotypes
Haplo2Geno | Conversion of haplotypes into genotypes
LDdam | Calculation of maternal LD matrix
LDsire | Calculation of paternal LD matrix
matLD | testdata: maternal linkage disequilibrium
pos.chr | testdata: genetic map positions
pwr.normtest | Probability under alternative hypothesis (power)
pwr.snpblup | Wrapper function for sample size calculation
search.best.n.bisection | Method of bisection for estimating optimal sample size
simpleM | Calculation of effective number of independent tests
startvalue | Start value for estimating optimal sample size
tagSNP | tagSNP
testdata | Description of the testdata