R: Multipopulation Evolutionary Strategy HMS

# Multipopulation Evolutionary Strategy HMS

## Documentation for package ‘hmsr’ version 1.0.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

default_run_gradient_method | Function that runs gradient method for one deme. Wrapper function for stats::optim.
ecr_metaepoch | Function that runs one ecr metaepoch. Wrapper function for ecr::ecr.
euclidean_distance | Euclidean distance
ga_metaepoch | Function that runs one GA metaepoch. Wrapper function for GA::ga.
gsc_max_fitness_evaluations | Factory function for a global stopping condition that stops the computation after fitness function has been evaluated given number of times.
gsc_metaepochs_count | Factory function for a global stopping condition that stops the computation after given number of metaepochs.
gsc_trivial | Factory function for a global stopping condition that never stops the computation. It results in hms running until there are no more active demes.
hms | Maximization (or minimization) of a fitness function using Hierarchic Memetic Strategy.
hms-class | A S4 class representing a result of hms.
lsc_max_fitness_evaluations | Factory function for a local stopping condition that stops a deme after given number of fitness function evaluations has been made in that deme.
lsc_metaepochs_without_active_child | Factory function for a local stopping condition that stops a deme after given number of metaepochs have past since last metaepoch during which this deme had an active child.
lsc_metaepochs_without_improvement | Factory function for a local stopping condition that stops a deme after given number of consecutive metaeopochs without an improvement of the best solution found in that deme.
lsc_trivial | Factory function for a trivial local stopping condition that lets a deme be active forever. It is usually used in the root of a hms tree.
manhattan_distance | Manhattan distance
MetaepochSnapshot-class | A S4 class representing a snapshot of one metaepoch.
plot-method | Plot method for "hms" class.
plotActiveDemes | plotActiveDemes method for "hms" class.
plotActiveDemes-method | plotActiveDemes method for "hms" class.
plotPopulation | plotPopulation method for "hms" class.
plotPopulation-method | plotPopulation method for "hms" class.
print-method | Print method for class "hms".
printBlockedSprouts | printBlockedSprouts method for "hms" class.
printBlockedSprouts-method | printBlockedSprouts method for "hms" class.
printTree | printTree method for class "hms".
printTree-method | printTree method for class "hms".
rtnorm_mutation | Factory function that creates normal mutation function
saveMetaepochsPopulations | saveMetaepochsPopulations method for "hms" class.
saveMetaepochsPopulations-method | saveMetaepochsPopulations
sc_max_metric | Default sprouting condition based on given metric.
show-method | Show method for class "hms".
summary-method | Summary method for class "hms".