Package: hlaR
Type: Package
Title: Tools for HLA Data
Version: 1.0.0
Description: A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database <https://haplostats.org/haplostats>. High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' <http://www.epitopes.net> versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.
Authors@R: c(person("Joan","Zhang",email = "joan.zhang@emory.edu", role = c("aut", "cre")),
             person("Aileen","Johnson",email = "aileen.johnson@emory.edu ", role = c("aut")),
             person("Christian P","Larsen",email = "clarsen@emory.edu", role = c("cph", "aut")))
Depends: R (>= 4.1.0)
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.2
Suggests: knitr, rmarkdown
URL: https://pubmed.ncbi.nlm.nih.gov/35101308/,
        https://emory-larsenlab.shinyapps.io/hlar_shiny/
BugReports: https://github.com/LarsenLab/hlaR/issues
VignetteBuilder: knitr
Imports: devtools, tidyverse, dplyr, reshape2, schoolmath, tibble,
        tidyselect, stringr, purrr, tidyr, utils, readr, janitor
NeedsCompilation: no
Packaged: 2023-01-31 16:11:49 UTC; xzhan50
Author: Joan Zhang [aut, cre],
  Aileen Johnson [aut],
  Christian P Larsen [cph, aut]
Maintainer: Joan Zhang <joan.zhang@emory.edu>
Repository: CRAN
Date/Publication: 2023-01-31 17:10:02 UTC
Built: R 4.6.0; ; 2026-04-30 20:28:17 UTC; unix
