Package: hhsmm
Date: 2024-09-04
Title: Hidden Hybrid Markov/Semi-Markov Model Fitting
Version: 0.4.2
Authors@R: c(person("Morteza", "Amini", role = c("aut", "cre","cph"),
                     email = "morteza.amini@ut.ac.ir"),
              person("Afarin", "Bayat", role = "aut"),
              person("Reza", "Salehian", role = "aut"))
Description: Develops algorithms for fitting, prediction, simulation 
  and initialization of the following models
  (1)- hidden hybrid Markov/semi-Markov model, 
  introduced by Guedon (2005) <doi:10.1016/j.csda.2004.05.033>, 
  (2)- nonparametric mixture of B-splines emissions (Langrock et al., 2015
  <doi:10.1111/biom.12282>), 
  (3)- regime switching regression model 
  (Kim et al., 2008 <doi:10.1016/j.jeconom.2007.10.002>) and auto-regressive 
  hidden hybrid Markov/semi-Markov model, 
  (4)- spline-based nonparametric 
  estimation of additive state-switching models  
  (Langrock et al., 2018 <doi:10.1111/stan.12133>)
  (5)- robust emission model proposed by 
  Qin et al, 2024 <doi:10.1007/s10479-024-05989-4>
  (6)- several emission distributions, including mixture of multivariate normal  
  (which can also handle missing data using EM algorithm) and multi-nomial emission 
  (for modeling polymer or DNA sequences)
  (7)- tools for prediction of future state sequence, computing the score of a new sequence,
  splitting the samples and sequences to train and test sets, computing the information measures of 
  the models, computing the residual useful lifetime (reliability) and many other useful tools ...
  (read for more description: Amini et al., 2022 <doi:10.1007/s00180-022-01248-x> and its 
  arxiv version: <doi:10.48550/arXiv.2109.12489>). 
License: GPL-3
Imports: Rcpp, Rdpack, MASS, mice, progress, magic, splines2
RdMacros: Rdpack
Depends: R (>= 4.3.0), CMAPSS, mvtnorm
Encoding: UTF-8
BugReports: https://github.com/mortamini/hhsmm/issues
RoxygenNote: 7.3.0
LinkingTo: Rcpp
Suggests: testthat (>= 3.0.0)
NeedsCompilation: yes
Packaged: 2024-09-04 07:26:31 UTC; LENOVO.PIESC
Author: Morteza Amini [aut, cre, cph],
  Afarin Bayat [aut],
  Reza Salehian [aut]
Maintainer: Morteza Amini <morteza.amini@ut.ac.ir>
Repository: CRAN
Date/Publication: 2024-09-04 09:00:10 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-30 20:27:26 UTC; unix
Archs: hhsmm.so.dSYM
