R: Age-Structured Spatio-Temporal Models for Infectious Disease Counts

# Age-Structured Spatio-Temporal Models for Infectious Disease Counts

## Documentation for package ‘hhh4contacts’ version 0.13.4

- DESCRIPTION file
- Code demos. Use demo() to run them.
- Package NEWS

## Help Pages

adaptP | Adapt a Transition Matrix to a Specific Stationary Distribution
addGroups2WFUN | Group-Dependent Parametric Weights
aggregateC | Aggregate a Contact Matrix
aggregateCountsArray | Aggregate an Array of Counts wrt One Dimension (Stratum)
C2pop | Adapt a Contact Matrix to Population Fractions
contactmatrix | POLYMOD Contact Matrices for Germany
contactmatrix_mossong | POLYMOD Contact Matrices for Germany
contactmatrix_mossong_physical | POLYMOD Contact Matrices for Germany
contactmatrix_POLYMOD | POLYMOD Contact Matrices for Germany
contactmatrix_POLYMOD_physical | POLYMOD Contact Matrices for Germany
contactmatrix_wallinga | POLYMOD Contact Matrices for Germany
contactmatrix_wallinga_physical | POLYMOD Contact Matrices for Germany
counts | Create '"sts"' Objects from the Berlin Norovirus Data
dssAggregate | Compute the DSS on Aggregated Predictions and Observations
expandC | Expand the Contact Matrix over Regions
fitC | Estimate the Power of the Contact Matrix in a '"hhh4"' Model
make_powerC | Exponentiate a Matrix via Eigendecomposition
map | Create '"sts"' Objects from the Berlin Norovirus Data
noroBE | Create '"sts"' Objects from the Berlin Norovirus Data
plotC | Generate an Image of a Contact Matrix
plotHHH4_fitted_groups | Plot Mean Components of a 'hhh4' Fit by Group
plotHHH4_maps_groups | Plot Mean Components of a 'hhh4' Fit by District Averaged Over Time
plotHHH4_season_groups | Plot Seasonality of a 'hhh4' Fit by Group
pop2011 | Berlin and German Population by Age Group, 2011
popDE | Berlin and German Population by Age Group, 2011
powerC | Exponentiate a Matrix via Eigendecomposition
stationary | Stationary Distribution of a Transition Matrix
stratum | Extract Strata
stratum-method | Extract Strata
stsplothook | Hook functions for 'stsplot_time1'
stsplothook_highlight | Hook functions for 'stsplot_time1'