R: Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

# Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

## Documentation for package ‘hagis’ version 4.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

autoplot.hagis.complexities | Plot hagis Complexities Objects
autoplot.hagis.gene.summary | Plot hagis Summary Objects
calculate_complexities | Calculate Distribution of Complexities by Sample
calculate_diversities | Calculate Diversities Indices
create_binary_matrix | Create Binary Data Matrix From Pathotype Data
diversities_table | Custom Print for hagis Diversities Tables
individual_pathotypes | Prints Individual Pathotypes for Each Sample
P_sojae_survey | _Phytophthora sojae_ Survey Example Data
sample_meta | _Phytophthora sojae_ Survey Example Metadata
summarize_gene | Calculate and Summarize Distribution of Susceptibilities by Gene