R: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

# 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

## Documentation for package ‘gwasrapidd’ version 0.99.18

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

%>% | Pipe operator
associations-class | An S4 class to represent a set of GWAS Catalog associations
associations_ex01 | gwasrapidd entities' examples
associations_ex02 | gwasrapidd entities' examples
association_to_study | Map an association id to a study id
association_to_trait | Map an association id to an EFO trait id
association_to_variant | Map an association id to a variant id
bind | Bind GWAS Catalog objects
cytogenetic_bands | GRCh38 human cytogenetic bands.
exists_variant | Check if a variant exists in the Catalog.
gc_examples | gwasrapidd entities' examples
get_associations | Get GWAS Catalog associations
get_child_efo | Get all child terms of this trait in the EFO hierarchy
get_metadata | Get GWAS Catalog metadata
get_studies | Get GWAS Catalog studies
get_traits | Get GWAS Catalog EFO traits
get_variants | Get GWAS Catalog variants
intersect | Set operations on GWAS Catalog objects.
is_ebi_reachable | Is the GWAS Catalog REST API server reachable?
n | Number of GWAS Catalog entities
n-method | Number of GWAS Catalog entities
open_in_dbsnp | Browse dbSNP from SNP identifiers.
open_in_gtex | Browse GTEx from SNP identifiers.
open_in_gwas_catalog | Browse GWAS Catalog entities from the GWAS Web Graphical User Interface
open_in_pubmed | Browse PubMed from PubMed identifiers.
setdiff | Set operations on GWAS Catalog objects.
setequal | Set operations on GWAS Catalog objects.
setop | Set operations on GWAS Catalog objects.
studies-class | An S4 class to represent a set of GWAS Catalog studies
studies_ex01 | gwasrapidd entities' examples
studies_ex02 | gwasrapidd entities' examples
study_to_association | Map a study id to an association id
study_to_trait | Map a study id to a EFO trait id
study_to_variant | Map a study id to a variant id
subset-associations | Subset an associations object
subset-studies | Subset a studies object
subset-traits | Subset a traits object
subset-variants | Subset a variants object
traits-class | An S4 class to represent a set of GWAS Catalog EFO traits.
traits_ex01 | gwasrapidd entities' examples
traits_ex02 | gwasrapidd entities' examples
trait_to_association | Map an EFO trait id to an association id
trait_to_study | Map an EFO trait id to a study id
trait_to_variant | Map an EFO trait id to a variant id
union | Set operations on GWAS Catalog objects.
variants-class | An S4 class to represent a set of GWAS Catalog variants
variants_ex01 | gwasrapidd entities' examples
variants_ex02 | gwasrapidd entities' examples
variant_to_association | Map a variant id to an association id
variant_to_study | Map a variant id to a study id
variant_to_trait | Map a variant id to an EFO trait
write_xlsx | Export a GWAS Catalog object to xlsx
[-method | Subset an associations object
[-method | Subset a studies object
[-method | Subset a traits object
[-method | Subset a variants object