R: Mixed-Effects REML Incorporating Generalized Inverses

# Mixed-Effects REML Incorporating Generalized Inverses

## Documentation for package ‘gremlin’ version 1.1.0

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

gremlin-package | Mixed-Effects REML Incorporating Generalized Inverses
ai | REML optimization algorithms for mixed-effect models.
AIC.gremlin | Methods to extract log-likelihood and information criterion of a gremlin model.
algChk | Optimization Algorithm Checks.
anova.gremlin | anova() for gremlin objects
ccFun | Convergence Criteria Checks for REML.
ccFun, | Convergence Criteria Checks for REML.
ccFun1 | Convergence Criteria Checks for REML.
ccFun1, | Convergence Criteria Checks for REML.
ccFun2 | Convergence Criteria Checks for REML.
ccFun2, | Convergence Criteria Checks for REML.
ccFun3 | Convergence Criteria Checks for REML.
ccFun3, | Convergence Criteria Checks for REML.
ccFun4 | Convergence Criteria Checks for REML.
chol2inv_ii | Partial sparse matrix inverse from a Cholesky factorization.
conTrans | (Co)variance parameter transformations.
covFun | (Co)variance parameter transformations.
deltaSE | Delta Method to Calculate Standard Errors for Functions of (Co)variances.
deltaSE.default | Delta Method to Calculate Standard Errors for Functions of (Co)variances.
deltaSE.formula | Delta Method to Calculate Standard Errors for Functions of (Co)variances.
deltaSE.list | Delta Method to Calculate Standard Errors for Functions of (Co)variances.
em | REML optimization algorithms for mixed-effect models.
fixed.effects | Fixed Effect Estimates of 'class' 'gremlin'
fixef | Fixed Effect Estimates of 'class' 'gremlin'
fixef.gremlin | Fixed Effect Estimates of 'class' 'gremlin'
getCall.gremlin | Mixed-effect modeling functions.
gradFun | REML optimization algorithms for mixed-effect models.
gradFun_fd | REML optimization algorithms for mixed-effect models.
gremlin | Mixed-effect modeling functions.
gremlinControl | Advanced Options for Mixed-effect modeling functions.
gremlinR | Mixed-effect modeling functions.
gremlinSetup | Mixed-effect modeling functions.
logLik.gremlin | Methods to extract log-likelihood and information criterion of a gremlin model.
matlist2vech | (Co)variance parameter transformations.
mkModMats | Mixed-effect modeling functions.
Mrode11 | Weight gain data.
nobs.gremlin | Number of observations in data from gremlin model fit objects
npar.gremlin | Methods to extract log-likelihood and information criterion of a gremlin model.
nu2theta_lambda | (Co)variance parameter transformations.
nu2theta_noTrans | (Co)variance parameter transformations.
nu2theta_trans | (Co)variance parameter transformations.
nuAI2thetaAIinv_lambda | (Co)variance parameter transformations.
nuVar2thetaVar_lambda | (Co)variance parameter transformations.
print.summary.gremlin | Gremlin model summary.
reml | REML optimization algorithms for mixed-effect models.
remlIt | Mixed-effect model Restricted Maximum Likelihood (REML) iterations.
remlIt.default | Mixed-effect model Restricted Maximum Likelihood (REML) iterations.
remlIt.gremlinR | Mixed-effect model Restricted Maximum Likelihood (REML) iterations.
resid.gremlin | Residuals of 'class' 'gremlin'
residuals.gremlin | Residuals of 'class' 'gremlin'
runtime | Time to execute the gremlin model
start2theta | (Co)variance parameter transformations.
stTrans | (Co)variance parameter transformations.
summary.gremlin | Gremlin model summary.
theta2nu_lambda | (Co)variance parameter transformations.
theta2nu_trans | (Co)variance parameter transformations.
tr | Matrix trace methods.
tr.default | Matrix trace methods.
tr.dgCMatrix | Matrix trace methods.
tr.dsCMatrix | Matrix trace methods.
tugug_trace | REML optimization algorithms for mixed-effect models.
update | Mixed-effect modeling functions.
update.gremlin | Mixed-effect modeling functions.
vech2matlist | (Co)variance parameter transformations.