R: Models for Correlation Matrices Based on Graphs

# Models for Correlation Matrices Based on Graphs

## Documentation for package ‘graphpcor’ version 0.1.25

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Code demos. Use demo() to run them.

## Help Pages

basecor | A base Cholesky model of a correlation matrix
basecor-utils | Functions used by/to basecor
basecor.matrix | A base Cholesky model of a correlation matrix
basecor.numeric | A base Cholesky model of a correlation matrix
basepcor | A base precision's Cholesky model for a correlation matrix
basepcor-utils | Functions used by/to basepcor
basepcor.matrix | A base precision's Cholesky model for a correlation matrix
basepcor.numeric | A base precision's Cholesky model for a correlation matrix
cgeneric.basecor | Build an 'cgeneric' for a correlation matrix PC-prior.
cgeneric.graphpcor | graphpcor: correlation from nodes and edges
cgeneric.Matrix | graphpcor: correlation from nodes and edges
cgeneric.treepcor | treepcor: correlation from tree
cgeneric_graphpcor | Build an 'cgeneric' for a (graph based) correlation matrix PC-prior.
cgeneric_LKJ | Build an 'cgeneric' model for the LKG prior on correlation matrix.
cgeneric_pc_correl | Build an 'cgeneric' for a correlation matrix PC-prior.
cgeneric_treepcor | Build an 'cgeneric' for 'treepcor()')
cgeneric_Wishart | Build an 'cgeneric' to implement the Wishart prior for a precision matrix.
cholcor | Functions used by/to basecor
corr2theta | Functions used by/to basecor
dim.graphpcor | graphpcor: correlation from nodes and edges
dim.treepcor | treepcor: correlation from tree
dLKJ | The LKJ density for a correlation matrix
drop1.treepcor | treepcor: correlation from tree
dspd | Functions for numerical algorithms
dtheta | Internal functions to map between Euclidean and spherical coordinates
edges | Retrieve edges of an object
edges.default | Retrieve edges of an object
edges.graphpcor | Retrieve edges of an object
edges.treepcor | Retrieve edges of an object
etreepcor2precision | treepcor: correlation from tree
etreepcor2variance | treepcor: correlation from tree
fillLprec | Functions used by/to basepcor
gphcQ | graphpcor: correlation from nodes and edges
graphpcor | graphpcor: correlation from nodes and edges
graphpcor.character | graphpcor: correlation from nodes and edges
graphpcor.formula | graphpcor: correlation from nodes and edges
graphpcor.list | graphpcor: correlation from nodes and edges
graphpcor.Matrix | graphpcor: correlation from nodes and edges
graphpcor.matrix | graphpcor: correlation from nodes and edges
hessian.basecor | Functions for numerical algorithms
hessian.basepcor | Functions for numerical algorithms
hessian.graphpcor | Functions for numerical algorithms
internal-utils | Internal functions.
KLD10 | Internal functions.
Laplacian | The Laplacian of a graph
Laplacian.default | The Laplacian of a graph
Laplacian.graphpcor | graphpcor: correlation from nodes and edges
Laplacian.Matrix | The Laplacian of a graph
Laplacian.matrix | The Laplacian of a graph
Lprec0 | Functions used by/to basepcor
m_iparams_fncheck | Internal functions.
numeric-utils | Functions for numerical algorithms
param-utils | Internal functions to map between Euclidean and spherical coordinates
pcSigmasCheck | Internal functions.
plot.graphpcor | graphpcor: correlation from nodes and edges
plot.treepcor | treepcor: correlation from tree
print.basecor | A base Cholesky model of a correlation matrix
print.basepcor | A base precision's Cholesky model for a correlation matrix
print.graphpcor | graphpcor: correlation from nodes and edges
print.treepcor | treepcor: correlation from tree
p_iLtheta_fncheck | Internal functions.
rphi2x | Internal functions to map between Euclidean and spherical coordinates
rtheta | Internal functions to map between Euclidean and spherical coordinates
stan_add | Build/add STAN code/data for the correlation's PC-prior.
stan_add_code | Build/add STAN code/data for the correlation's PC-prior.
stan_add_graphpcor | Build/add STAN code/data for the correlation's PC-prior.
stan_add_pc_correl | Build/add STAN code/data for the correlation's PC-prior.
summary.graphpcor | graphpcor: correlation from nodes and edges
summary.treepcor | treepcor: correlation from tree
tpcQ | treepcor: correlation from tree
treepcor | treepcor: correlation from tree
vcov.graphpcor | graphpcor: correlation from nodes and edges
vcov.treepcor | treepcor: correlation from tree
x2rphi | Internal functions to map between Euclidean and spherical coordinates