R: 'ggplot2' Plots for the 'vegan' Package

# 'ggplot2' Plots for the 'vegan' Package

## Documentation for package ‘ggvegan’ version 0.2.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

add_biplot_arrows | Adds a biplot arrow layer to an existing plot
add_biplot_centroids | Adds a biplot arrow layer to an existing plot
add_spp_site_scores | Adds species and site score layers to an existing plot
arrow_mul | Scale Vectors to Data
autoplot.anosim | ggplot-based plot for objects of class '"anosim"'
autoplot.cca | ggplot-based plot for objects of class '"cca"'
autoplot.dbrda | ggplot-based plot for objects of class '"dbrda"'
autoplot.decorana | ggplot-based plot for objects of class '"decorana"'
autoplot.envfit | ggplot-based plot for 'envfit' objects
autoplot.fisherfit | Plot Fisher's log-series
autoplot.isomap | ggplot-based plot for objects of class '"isomap"'
autoplot.metaMDS | ggplot-based plot for objects of class '"metaMDS"'
autoplot.permustats | Autoplot Graphics for vegan permustats Objects
autoplot.poolaccum | ggplot-based plot for objects of class '"poolaccum"'
autoplot.prc | ggplot-based plot for objects of class '"prc"'
autoplot.prestonfit | Plot Preston's log-normal model of species abundance
autoplot.rda | ggplot-based plot for objects of class "rda"
autoplot.vegan_pco | ggplot-based plot for objects of class '"vegan_pco"'
check_user_layers | Check user-supplied layers against list of valid layers
fortify.anosim | Fortify analysis of similarities (ANOSIM) results
fortify.cca | Fortify a '"cca"' object.
fortify.dbrda | Fortify a '"dbrda"' object.
fortify.decorana | Fortify a '"decorana"' object.
fortify.envfit | Fortify method for 'envfit' objects
fortify.fisherfit | Tidied species rank abundance data and estimated Fisher's log-series
fortify.isomap | Fortify isometric feature mapping results
fortify.metaMDS | Fortify a '"mataMDS"' object.
fortify.permustats | Fortify permutation statistics
fortify.poolaccum | Fortify extrapolated species richness of a species pool
fortify.prc | Fortify a '"prc"' object
fortify.prestonfit | Tidied species octave abundance data
fortify.rda | Fortify a '"rda"' object.
fortify.renyiaccum | Fortify Rényi accumulation curves
fortify.vegan_pco | Fortify a '"vegan_pco"' object.
geom_ordi_arrow | Add a biplot arrow layer to an ordiggplot
geom_ordi_axis | Crosshair for axes in eigenvector methods
geom_ordi_label | Add a label layer to an ordiggplot
geom_ordi_point | Add a point layer to an ordiggplot
geom_ordi_text | Add a text layer to an ordiggplot
get_dimension_names | Extract the names of the dimensions to plot as a character vector
ggscores | Create a ggplot Object
label_fun | Adds a label layer using one of a set of common geoms
layer_draw_list | List of layers to draw for a given vegan object
ordiggplot | Create a ggplot Object
scores_length | Number of scores
StatVectorfit | Add Fitted Vectors to Ordination plots
stat_vectorfit | Add Fitted Vectors to Ordination plots
tidy.anosim | Fortify analysis of similarities (ANOSIM) results
tidy.cca | Fortify a '"cca"' object.
tidy.dbrda | Fortify a '"dbrda"' object.
tidy.decorana | Fortify a '"decorana"' object.
tidy.envfit | Fortify method for 'envfit' objects
tidy.fisherfit | Tidied species rank abundance data and estimated Fisher's log-series
tidy.isomap | Fortify isometric feature mapping results
tidy.metaMDS | Fortify a '"mataMDS"' object.
tidy.permustats | Fortify permutation statistics
tidy.poolaccum | Fortify extrapolated species richness of a species pool
tidy.prc | Fortify a '"prc"' object
tidy.prestonfit | Tidied species octave abundance data
tidy.rda | Fortify a '"rda"' object.
tidy.renyiaccum | Fortify Rényi accumulation curves
tidy.vegan_pco | Fortify a '"vegan_pco"' object.
valid_layers | Valid layers for vegan objects
valid_layers.cca | Valid layers for vegan objects
valid_layers.dbrda | Valid layers for vegan objects
valid_layers.rda | Valid layers for vegan objects