R: Tools for Outbreak Investigation/Infectious Disease Surveillance

# Tools for Outbreak Investigation/Infectious Disease Surveillance

## Documentation for package ‘ggsurveillance’ version 0.5.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

align_and_bin_dates_seasonal | Align dates for seasonal comparison
align_dates_seasonal | Align dates for seasonal comparison
bin_by_date | Aggregate data by time periods
create_agegroups | Create Age Groups from Numeric Values
expand_counts | Duplicate rows according to a weighting variable
geometric_mean | Compute a Geometric Mean
geom_area_diverging | Create diverging bar charts, diverging area charts or other plots for opposing categorical data.
geom_bar_diverging | Create diverging bar charts, diverging area charts or other plots for opposing categorical data.
geom_col_range | Create a ranged bar chart
geom_epicurve | Create an epidemic curve plot or bin/count observations by date periods
geom_epicurve_point | Create an epidemic curve plot or bin/count observations by date periods
geom_epicurve_text | Create an epidemic curve plot or bin/count observations by date periods
geom_epigantt | Epi Gantt Chart: Visualize Epidemiological Time Intervals
geom_hline_year | Automatically create lines at the turn of every year
geom_label_last_value | Add labels or points to the last value of a line chart
geom_label_last_value, stat_last_value | Add labels or points to the last value of a line chart
geom_label_last_value_repel | Add labels or points to the last value of a line chart
geom_text_last_value | Add labels or points to the last value of a line chart
geom_text_last_value_repel | Add labels or points to the last value of a line chart
geom_vline_year | Automatically create lines at the turn of every year
guide_axis_nested_date | Nested axis guide for date scales
influenza_germany | German Influenza (FLU) Surveillance data
label_date | Date labeller
label_date_short | Date labeller
label_power10 | Format numbers as power-of-10 R expressions
label_skip | Skip labels on an axis
linelist_hospital_outbreak | Line list of a fictional hospital outbreak (Data)
population_german_states | Population of the German states (2023)
scale_continuous_diverging | Diverging continuous scales for diverging bar charts with symmetrical limits
scale_x_cases_5er | Continuous x-axis and y-axis scale for (case) counts
scale_x_continuous_diverging | Diverging continuous scales for diverging bar charts with symmetrical limits
scale_x_discrete_reverse | Reversed discrete scale for 'ggplot2'
scale_y_cases_5er | Continuous x-axis and y-axis scale for (case) counts
scale_y_continuous_diverging | Diverging continuous scales for diverging bar charts with symmetrical limits
scale_y_discrete_reverse | Reversed discrete scale for 'ggplot2'
StatBinDate | Create an epidemic curve plot or bin/count observations by date periods
StatDateCount | Create an epidemic curve plot or bin/count observations by date periods
StatEpicurve | Create an epidemic curve plot or bin/count observations by date periods
StatLastValue | Add labels or points to the last value of a line chart
StatLastValueRepel | Add labels or points to the last value of a line chart
stat_bin_date | Create an epidemic curve plot or bin/count observations by date periods
stat_date_count | Create an epidemic curve plot or bin/count observations by date periods
stat_diverging | Create diverging bar charts, diverging area charts or other plots for opposing categorical data.
stat_last_value | Add labels or points to the last value of a line chart
theme_mod_disable_legend | Quickly adjust the legend position
theme_mod_disable_legend, theme_mod_legend_position | Quickly adjust the legend position
theme_mod_legend_bottom | Quickly adjust the legend position
theme_mod_legend_left | Quickly adjust the legend position
theme_mod_legend_position | Quickly adjust the legend position
theme_mod_legend_right | Quickly adjust the legend position
theme_mod_legend_top | Quickly adjust the legend position
theme_mod_remove_legend_title | Quickly adjust the legend position
theme_mod_remove_minor_grid | Quickly remove the minor lines of the panel grid
theme_mod_remove_minor_grid_x | Quickly remove the minor lines of the panel grid
theme_mod_remove_minor_grid_y | Quickly remove the minor lines of the panel grid
theme_mod_remove_panel_grid | Quickly remove the minor lines of the panel grid
theme_mod_rotate_axis_labels | Rotate axis labels
theme_mod_rotate_x_axis_labels | Rotate axis labels
theme_mod_rotate_x_axis_labels_30 | Rotate axis labels
theme_mod_rotate_x_axis_labels_45 | Rotate axis labels
theme_mod_rotate_x_axis_labels_60 | Rotate axis labels
theme_mod_rotate_x_axis_labels_90 | Rotate axis labels
theme_mod_rotate_y_axis_labels | Rotate axis labels
uncount | Duplicate rows according to a weighting variable
uncount, expand_counts | Duplicate rows according to a weighting variable