
@book{went_experimental_1957,
	title = {The experimental control of plant growth},
	volume = {17},
	publisher = {Chronica Botanica Co., Waltham, Mass., USA and The Ronald Press Co., New York, USA},
	author = {Went, Frits W},
	year = {1957},
}

@article{kader_comparison_2005,
	title = {A comparison of seed germination calculation formulae and the associated interpretation of resulting data},
	volume = {138},
	journal = {Journal and Proceedings of the Royal Society of New South Wales},
	author = {Kader, M. A.},
	year = {2005},
	pages = {65--75},
}

@article{goodchild_method_1971,
	title = {A method of measuring seed germination in physiological studies},
	volume = {35},
	number = {141},
	journal = {Annals of Botany},
	author = {Goodchild, N. A. and Walker, M. G.},
	year = {1971},
	pages = {615--621},
}

@article{al-mudaris_notes_1998,
	title = {Notes on various parameters recording the speed of seed germination},
	volume = {99},
	number = {2},
	journal = {Der Tropenlandwirt - Journal of Agriculture in the Tropics and Subtropics},
	author = {Al-Mudaris, M. A.},
	year = {1998},
	pages = {147--154},
}

@article{edmond_effects_1958,
	title = {The effects of temperature, sand and soil, and acetone on germination of okra seed},
	volume = {71},
	journal = {Proceedings of the American Society for Horticultural Science},
	author = {Edmond, J. B. and Drapala, W. J.},
	year = {1958},
	pages = {428--434},
}

@inproceedings{labouriau_uma_1983,
	title = {Uma nova linha de pesquisa na fisiologia da germinacao das sementes},
	booktitle = {Anais do {XXXIV} {Congresso} {Nacional} de {Botanica}. {SBB}, {Porto} {Alegre}},
	publisher = {Sociedade Botanica do Brasil},
	author = {Labouriau, L. G.},
	year = {1983},
	pages = {11--50},
}

@article{djavanshir_germination_1976,
	title = {Germination value-{A} new formula},
	volume = {25},
	number = {2},
	journal = {Silvae Genetica},
	author = {Djavanshir, K. and Pourbeik, H.},
	year = {1976},
	pages = {79--83},
}

@inproceedings{george_influence_1961,
	title = {Influence of germination temperature on the expression of post-harvest dormancy in wheat},
	booktitle = {Crop {Science} {Abstracts}; {Western} {Society} of {Crop} {Science} {Annual} {Meeting}, 1961},
	publisher = {Western Society of Crop Science},
	author = {George, D. W.},
	year = {1961},
	pages = {15},
}

@book{khandakar_jute_1983,
	title = {Jute seed quality},
	publisher = {Bangladesh Agricultural Research Council, Dhaka},
	author = {Khandakar, A. L. and Bradbeer, J. W.},
	year = {1983},
}

@article{nichols_two_1968,
	title = {Two approaches to the study of germination data},
	volume = {33},
	number = {3},
	journal = {Proceedings of the International Seed Testing Association},
	author = {Nichols, M. A. and Heydecker, W.},
	year = {1968},
	pages = {531--540},
}

@article{edwards_temperature_1932,
	title = {Temperature relations of seed germination},
	volume = {7},
	number = {4},
	journal = {The Quarterly Review of Biology},
	author = {Edwards, Thomas I.},
	month = dec,
	year = {1932},
	pages = {428--443},
}

@article{khamassi_optimal_2013,
	title = {Optimal germination temperature assessed by indices and models in field bean (\emph{{Vicia} faba} {L}. var. \emph{minor})},
	volume = {78},
	language = {en},
	number = {2},
	journal = {Agriculturae Conspectus Scientificus},
	author = {Khamassi, Khalil and Harbaoui, Kalthoum and Jaime, A. Teixeira da Silva and Jeddi, Faycal Ben},
	month = jun,
	year = {2013},
	pages = {131--136},
}

@article{labouriau_germination_1976,
	title = {On the germination of seeds of \emph{{Calotropis} procera} ({Ait}.) {Ait}. f},
	volume = {48},
	number = {263-284},
	journal = {Anais da Academia Brasileira de Ciencias},
	author = {Labouriau, L. G. and Valadares, M. E. B.},
	year = {1976},
}

@phdthesis{reddy_effect_1978,
	type = {Ph.{D}. {Thesis}},
	title = {Effect of temperature on seed dormancy and alpha-amylase activity during kernel maturation and germination in wheat ({{Triticum} aestivum} {L}.) cultivars},
	school = {Oregon State University},
	author = {Reddy, Lekkala Vijayasimha},
	year = {1978},
}

@article{schrader_seed_2000,
	title = {Seed germination and seedling growth of \emph{{Alnus} maritima} from its three disjunct populations},
	volume = {125},
	language = {en},
	number = {1},
	journal = {Journal of the American Society for Horticultural Science},
	author = {Schrader, James A. and Graves, William R.},
	month = jan,
	year = {2000},
	pages = {128--134},
}

@article{allan_seedling_1962,
	title = {Seedling emergence rate of fall-sown wheat and its association with plant height and coleoptile length},
	volume = {54},
	language = {en},
	number = {4},
	journal = {Agronomy Journal},
	author = {Allan, R. E. and Vogel, O. A. and Peterson, C. J.},
	year = {1962},
	pages = {347},
}

@article{bouton_germination_1976,
	title = {Germination in freshly harvested seed of centipedegrass},
	volume = {68},
	language = {en},
	number = {6},
	journal = {Agronomy Journal},
	author = {Bouton, J. H. and Dudeck, A. E. and Smith, R. L.},
	year = {1976},
	pages = {991},
}

@article{grose_laboratory_1958,
	title = {Some laboratory germination responses of the seeds of river red gum, \emph{{Eucalyptus} camaldulensis} {Dehn}. {Syn}. \emph{{Eucalyptus} rostrata} {Schlecht}},
	volume = {6},
	language = {en},
	number = {2},
	journal = {Australian Journal of Botany},
	author = {Grose, R. J. and Zimmer, W. J.},
	year = {1958},
	pages = {129},
}

@article{brown_representing_1988-2,
	title = {Representing cumulative germination. 2. {The} use of the weibull function and other empirically derived curves},
	volume = {61},
	language = {en},
	number = {2},
	journal = {Annals of Botany},
	author = {Brown, R. F. and Mayer, D. G.},
	month = feb,
	year = {1988},
	pages = {127--138},
}

@article{brown_representing_1988,
	title = {Representing cumulative germination. 1. {A} critical analysis of single-value germination indices},
	volume = {61},
	language = {en},
	number = {2},
	journal = {Annals of Botany},
	author = {Brown, R. F. and Mayer, D. G.},
	month = feb,
	year = {1988},
	pages = {117--125},
}

@article{gordon_germination_1971,
	title = {The germination resistance test - {A} new test for measuring germination quality of cereals},
	volume = {51},
	language = {en},
	number = {2},
	journal = {Canadian Journal of Plant Science},
	author = {Gordon, Andrew G.},
	month = mar,
	year = {1971},
	pages = {181--183},
}

@article{mcnair_how_2012,
	title = {How to analyse seed germination data using statistical time-to-event analysis: {Non}-parametric and semi-parametric methods},
	volume = {22},
	shorttitle = {How to analyse seed germination data using statistical time-to-event analysis},
	language = {en},
	number = {02},
	journal = {Seed Science Research},
	author = {McNair, James N. and Sunkara, Anusha and Frobish, Daniel},
	month = jun,
	year = {2012},
	pages = {77--95},
}

@article{smith_germinating_1964,
	title = {Germinating and sprouting responses of the tomato at low temperatures},
	volume = {84},
	journal = {Proceedings of the American Society for Horticultural Science},
	author = {Smith, P. G. and Millet, A. H.},
	year = {1964},
	pages = {480--484},
}

@article{bonner_ideal_1967,
	title = {Ideal sowing depth for sweetgum seed},
	volume = {18},
	number = {1},
	journal = {Tree Planters' Notes},
	author = {Bonner, F. T.},
	year = {1967},
	pages = {1--1},
}

@article{gordon_observations_1969,
	title = {Some observations on the germination energy tests for cereals},
	volume = {59},
	journal = {Proceedings of the Association of Official Seed Analysts},
	author = {Gordon, Andrew G.},
	year = {1969},
	pages = {58--72},
}

@article{ellis_improved_1980,
	title = {Improved equations for the prediction of seed longevity},
	volume = {45},
	language = {en},
	number = {1},
	journal = {Annals of Botany},
	author = {Ellis, R. H. and Roberts, E. H.},
	month = jan,
	year = {1980},
	pages = {13--30},
}

@book{bradbeer_seed_1988,
	address = {Glasgow and London},
	title = {Seed {Dormancy} and {Germination}},
	language = {en},
	publisher = {Blackie},
	author = {Bradbeer, J. W.},
	year = {1988},
}

@article{kendrick_photocontrol_1969,
	title = {Photocontrol of germination in \emph{{Amaranthus} caudatus}},
	volume = {85},
	language = {en},
	number = {4},
	journal = {Planta},
	author = {Kendrick, Richard E. and Frankland, Barry},
	month = dec,
	year = {1969},
	pages = {326--339},
}

@article{ranal_how_2006,
	title = {How and why to measure the germination process?},
	volume = {29},
	number = {1},
	journal = {Brazilian Journal of Botany},
	author = {Ranal, Marli A. and de Santana, Denise Garcia},
	month = mar,
	year = {2006},
	pages = {1--11},
}

@article{farooq_thermal_2005,
	title = {Thermal hardening: {A} new seed vigor enhancement tool in rice},
	volume = {47},
	shorttitle = {Thermal {Hardening}},
	language = {en},
	number = {2},
	journal = {Journal of Integrative Plant Biology},
	author = {Farooq, Muhammad and Basra, S. M. A. and Ahmad, Nazir and Hafeez, K.},
	month = feb,
	year = {2005},
	pages = {187--193},
}

@article{coolbear_effect_1984,
	title = {The effect of low temperature pre-sowing treatment on the germination performance and membrane integrity of artificially aged tomato seeds},
	volume = {35},
	language = {en},
	number = {11},
	journal = {Journal of Experimental Botany},
	author = {Coolbear, P. and Francis, Adele and Grierson, D.},
	month = nov,
	year = {1984},
	pages = {1609--1617},
}

@book{baskin_seeds_1998,
	address = {San Diego},
	title = {Seeds: {Ecology}, {Biogeography}, and {Evolution} of {Dormancy} and {Germination}},
	isbn = {0-12-080260-0},
	language = {English},
	publisher = {Academic Press},
	author = {Baskin, C. C. and Baskin, J. M.},
	year = {1998},
}

@article{khan_effect_1984,
	title = {The effect of salinity and temperature on the germination of polymorphic seeds and growth of \emph{{Atriplex} triangularis} {Willd}},
	volume = {71},
	number = {4},
	journal = {American Journal of Botany},
	author = {Khan, M. A. and Ungar, I. A.},
	year = {1984},
	pages = {481--489},
}

@book{bewley_seeds_1994,
	address = {New York, USA},
	title = {Seeds: {Physiology} of {Development} and {Germination}},
	isbn = {0-306-44748-7},
	shorttitle = {Seeds},
	language = {English},
	publisher = {Plenum Publishing Corporation},
	author = {Bewley, J. D. and Black, M.},
	year = {1994},
	note = {tex.ids= bewley\_seeds:\_1994, bewley\_seeds:\_1994-1, bewley\_seeds:\_1994-2
googlebooksid: W6EbrewcpDwC},
}

@article{haugland_experiments_1996,
	title = {Experiments on bioassay sensitivity in the study of allelopathy},
	volume = {22},
	number = {10},
	journal = {Journal of Chemical Ecology},
	author = {Haugland, Espen and Brandsaeter, Lars Olav},
	year = {1996},
	pages = {1845--1859},
}

@article{timson_new_1965,
	title = {New method of recording germination data},
	volume = {207},
	copyright = {1965 Nature Publishing Group},
	language = {En},
	number = {4993},
	journal = {Nature},
	author = {Timson, J.},
	month = jul,
	year = {1965},
	pages = {216},
}

@book{aosa_seed_1983,
	address = {Ithaca, NY, USA},
	title = {Seed {Vigor} {Testing} {Handbook}},
	language = {en},
	publisher = {Association of Official Seed Analysts},
	author = {AOSA},
	year = {1983},
}

@article{throneberry_relation_1955,
	title = {Relation of respiratory and enzymatic activity to corn seed viability},
	volume = {30},
	number = {4},
	journal = {Plant Physiology},
	author = {Throneberry, Glyn O. and Smith, Frederick G.},
	month = jul,
	year = {1955},
	pages = {337--343},
}

@article{maguire_speed_1962,
	title = {Speed of germination - {Aid} in selection and evaluation for seedling emergence and vigor},
	volume = {2},
	language = {en},
	number = {2},
	journal = {Crop Science},
	author = {Maguire, James D.},
	year = {1962},
	pages = {176--177},
}

@article{scott_review_1984,
	title = {Review of data analysis methods for seed germination},
	volume = {24},
	language = {en},
	number = {6},
	journal = {Crop Science},
	author = {Scott, S. J. and Jones, R. A. and Williams, W. A.},
	year = {1984},
	pages = {1192--1199},
}

@article{ranal_effects_1999,
	title = {Effects of temperature on spore germination in some fern species from semideciduous mesophytic forest},
	volume = {89},
	number = {2},
	journal = {American Fern Journal},
	author = {Ranal, Marli A.},
	month = apr,
	year = {1999},
	pages = {149},
}

@article{quintanilla_effect_2000,
	title = {Effect of temperature on germination in northernmost populations of \emph{{Culcita} macrocarpa} and \emph{{Woodwardia} radicans}},
	volume = {2},
	language = {en},
	number = {6},
	journal = {Plant Biology},
	author = {Quintanilla, L. G. and Pajaron, S. and Pangua, E. and Amigo, J.},
	month = nov,
	year = {2000},
	pages = {612--617},
}

@incollection{ista_chapter_2015,
	title = {Chapter 5: {The} germination test},
	volume = {2015},
	shorttitle = {Chapter 5},
	booktitle = {International {Rules} for {Seed} {Testing}. {International} {Seed} {Testing} {Association}, {Zurich}, {Switzerland}.},
	publisher = {International Seed Testing Association},
	author = {{ISTA}},
	year = {2015},
	pages = {i--5--56},
}

@article{goloff_germination_1975,
	title = {A germination model for natural seed populations},
	volume = {52},
	number = {2},
	journal = {Journal of Theoretical Biology},
	author = {Goloff, Alexander A. and Bazzaz, F. A.},
	month = aug,
	year = {1975},
	pages = {259--283},
}

@article{tucker_estimating_1965,
	title = {Estimating rapidity of germination},
	volume = {5},
	language = {en},
	number = {5},
	journal = {Crop Science},
	author = {Tucker, Henry and Wright, L. Neal},
	year = {1965},
	pages = {398--399},
}

@article{primack_longevity_1985,
	title = {Longevity of individual flowers},
	volume = {16},
	number = {1},
	journal = {Annual Review of Ecology and Systematics},
	author = {Primack, R. B.},
	year = {1985},
	pages = {15--37},
}

@article{shannon_mathematical_1948,
	title = {A mathematical theory of communication},
	volume = {27},
	language = {en},
	number = {3},
	journal = {Bell System Technical Journal},
	author = {Shannon, C. E.},
	month = jul,
	year = {1948},
	pages = {379--423},
}

@book{heydecker_seed_1972,
	address = {University Park, USA},
	title = {Seed {Ecology}. {Proceedings} of the {Nineteenth} {Easter} {School} in {Agricultural} {Science}, {University} of {Nottingham}, 1972},
	publisher = {Pennsylvania State University Press},
	author = {Heydecker, W.},
	year = {1972},
}

@article{stroup_rethinking_2015,
	title = {Rethinking the analysis of non-normal data in plant and soil science},
	volume = {107},
	language = {en},
	number = {2},
	journal = {Agronomy Journal},
	author = {Stroup, Walter W.},
	year = {2015},
	pages = {811--827},
}

@article{hay_modelling_2014-1,
	title = {Modelling seed germination in response to continuous variables: {Use} and limitations of probit analysis and alternative approaches},
	volume = {24},
	shorttitle = {Modelling seed germination in response to continuous variables},
	language = {en},
	number = {03},
	journal = {Seed Science Research},
	author = {Hay, Fiona R. and Mead, Andrew and Bloomberg, Mark},
	month = sep,
	year = {2014},
	pages = {165--186},
}

@article{reddy_effect_1985,
	title = {Effect of temperature on seed dormancy of wheat},
	volume = {25},
	language = {en},
	number = {3},
	journal = {Crop Science},
	author = {Reddy, L. V. and Metzger, R. J. and Ching, T. M.},
	year = {1985},
	pages = {455},
}

@misc{survival-package,
	title = {A {Package} for {Survival} {Analysis} in {S}},
	author = {Therneau, Terry M},
	year = {2015},
}

@article{ritz_analysis_2013,
	title = {Analysis of germination data from agricultural experiments},
	volume = {45},
	journal = {European Journal of Agronomy},
	author = {Ritz, Christian and Pipper, Christian B. and Streibig, Jens C.},
	month = feb,
	year = {2013},
	pages = {1--6},
}

@book{gomes_curso_1960,
	title = {Curso {De} {Estatistica} {Experimental}},
	publisher = {Escola Superior de Agricultura Luiz de Queiroz, Universidade de Sao Paulo},
	author = {Gomes, F. P.},
	year = {1960},
}

@article{negm_effects_1978,
	title = {Effects of ethylene and carbon dioxide on the germination of osmotically inhibited lettuce seed},
	volume = {62},
	copyright = {(C) 1978 American Society of Plant Biologists},
	language = {en},
	number = {4},
	journal = {Plant Physiology},
	author = {Negm, Fayek B. and Smith, Orrin E.},
	month = oct,
	year = {1978},
	pages = {473--476},
}

@article{lyon_rapid_1966,
	title = {Rapid method for determining numerical indexes for time-course curves},
	volume = {211},
	copyright = {1966 Nature Publishing Group},
	language = {en},
	number = {5046},
	journal = {Nature},
	author = {Lyon, J. L. and Coffelt, R. J.},
	month = jul,
	year = {1966},
	pages = {330--330},
}

@article{melville_seed_1980,
	title = {Seed germination and early seedling vigor in progenies of inbred strawberry selections},
	volume = {15},
	number = {6, I},
	journal = {HortScience},
	author = {Melville, A. H. and Galletta, G. J. and Draper, A. D. and Ng, T. J.},
	year = {1980},
	pages = {749--750},
}

@article{fakorede_variability_1981,
	title = {Variability for seedling vigour in maize},
	volume = {17},
	language = {en},
	number = {2},
	journal = {Experimental Agriculture},
	author = {Fakorede, M. A. B. and Ojo, D. K.},
	month = apr,
	year = {1981},
	pages = {195--201},
}

@article{hsu_planting_1986,
	title = {Planting date effects on seedling development of perennial warm-season forage grasses. {I}. {Field} emergence},
	volume = {78},
	copyright = {(C) American Society of Agronomy},
	language = {en},
	number = {1},
	journal = {Agronomy Journal},
	author = {Hsu, F. H. and Nelson, C. J.},
	year = {1986},
	pages = {33--38},
}

@article{chopra_effect_1980,
	title = {Effect of soil temperature alteration by soil covers on seedling emergence of wheat (\emph{{Triticum} aestivum} {L}.) sown on two dates},
	volume = {57},
	language = {en},
	number = {1},
	journal = {Plant and Soil},
	author = {Chopra, Usha K. and Chaudhary, T. N.},
	month = feb,
	year = {1980},
	pages = {125--129},
}

@article{chaudhary_effect_1970,
	title = {Effect of temperature associated with levels of bulk density on rice seedling emergence},
	volume = {33},
	language = {en},
	number = {1},
	journal = {Plant and Soil},
	author = {Chaudhary, T. N. and Ghildyal, B. P.},
	month = aug,
	year = {1970},
	pages = {87--90},
}

@article{fakorede_relation_1980,
	title = {Relation between seedling vigor and selection for yield improvement in maize},
	volume = {25},
	number = {3},
	journal = {Maydica},
	author = {Fakorede, M. A. B. and Ayoola, A. O.},
	year = {1980},
	pages = {135--147},
}

@article{fakorede_heterotic_1983,
	title = {Heterotic effects and association of seedling vigour with mature characteristics and grain yield in some tropical maize cultivars},
	volume = {28},
	journal = {Maydica},
	author = {Fakorede, M. A. B. and Agbana, S. B.},
	year = {1983},
	pages = {327--338},
}

@article{mock_cold_1972,
	title = {Cold tolerance in adapted maize populations},
	volume = {12},
	language = {en},
	number = {4},
	journal = {Crop Science},
	author = {Mock, J.  J. and Eberhart, S. A.},
	month = jul,
	year = {1972},
	pages = {466--469},
}

@article{erbach_tillage_1982,
	title = {Tillage for continuous corn and corn-soybean rotation},
	volume = {25},
	number = {4},
	journal = {Transactions of the ASAE},
	author = {Erbach, Donald C.},
	year = {1982},
	pages = {906--0911},
}

@article{bilbro_soil_1982,
	title = {Soil crusts and cotton emergence relationships},
	volume = {25},
	number = {6},
	journal = {Transactions of the ASAE},
	author = {Bilbro, J. D. and Wanjura, D. F.},
	year = {1982},
	pages = {1484--1487},
}

@article{shmueli_emergence_1971,
	title = {Emergence, early growth, and salinity of five vegetable crops germinated by sprinkle and trickle irrigation in an arid zone},
	volume = {6},
	journal = {HortScience},
	author = {Shmueli, M. and Goldberg, D.},
	year = {1971},
	pages = {563--565},
}

@article{czabator_germination_1962,
	title = {Germination value: {An} index combining speed and completeness of pine seed germination},
	volume = {8},
	number = {4},
	journal = {Forest Science},
	author = {Czabator, Felix J},
	year = {1962},
	pages = {386--396},
}

@article{el-kassaby_seed_2008,
	title = {Seed germination: {Mathematical} representation and parameters extraction},
	volume = {54},
	shorttitle = {Seed {Germination}},
	language = {en},
	number = {2},
	journal = {Forest Science},
	author = {El-Kassaby, Yousry A. and Moss, Ian and Kolotelo, Dave and Stoehr, Michael},
	month = apr,
	year = {2008},
	pages = {220--227},
}

@article{evetts_germination_1972,
	title = {Germination and seedling development of common milkweed and other species},
	volume = {20},
	language = {en},
	number = {4},
	journal = {Weed Science},
	author = {Evetts, L. L. and Burnside, O. C.},
	month = jul,
	year = {1972},
	pages = {371--378},
}

@book{de_santana_alise_2004,
	address = {Brasilia},
	title = {Analise {Da} {Germinacao}: {Um} {Enfoque} {Estatistico}},
	publisher = {Universidade de Brasilia},
	author = {de Santana, D. G. and Ranal, Marli A.},
	year = {2004},
}

@article{wardle_allelopathic_1991,
	title = {Allelopathic influence of nodding thistle (\emph{{Carduus} nutans} {L}.) seeds on germination and radicle growth of pasture plants},
	volume = {34},
	language = {en},
	number = {2},
	journal = {New Zealand Journal of Agricultural Research},
	author = {Wardle, D. A. and Ahmed, M. and Nicholson, K. S.},
	month = apr,
	year = {1991},
	pages = {185--191},
}

@book{labouriau_germinacao_1983,
	title = {A {Germinacao} {Das} {Sementes}},
	publisher = {Organizacao dos Estados Americanos. Programa Regional de Desenvolvimento Cientifico e Tecnologico. Serie de Biologia. Monografia 24},
	author = {Labouriau, L. G.},
	year = {1983},
}

@article{kotowski_temperature_1926,
	title = {Temperature relations to germination of vegetable seeds},
	volume = {23},
	journal = {Proceedings of the American Society for Horticultural Science},
	author = {Kotowski, Feliks},
	year = {1926},
	pages = {176--184},
}

@article{perez_characterizing_2013,
	title = {Characterizing \emph{{Ipomopsis} rubra} ({Polemoniaceae}) germination under various thermal scenarios with non-parametric and semi-parametric statistical methods},
	volume = {238},
	language = {en},
	number = {4},
	journal = {Planta},
	author = {Perez, Hector E. and Kettner, Keith},
	month = oct,
	year = {2013},
	pages = {771--784},
}

@article{seglias_germination_2020,
	title = {Germination behaviour of forbs native to the southwestern {United} {States} following exposure to short-term seed bank conditions (-20\&deg;{C})},
	volume = {30},
	language = {en},
	number = {2},
	journal = {Seed Science Research},
	author = {Seglias, Alexandra E. and Finch, Jessamine and Kramer, Andrea T.},
	month = jun,
	year = {2020},
	pages = {81--91},
}

@mastersthesis{gardner_using_2017,
	address = {Gainesville, Florida},
	title = {Using seed biology to conserve \emph{{Harperocallis} flava}, a federally endangered endemic plant of the {Florida} panhandle},
	language = {en},
	school = {University of Florida},
	author = {Gardner, Amber Grey},
	year = {2017},
}

@inproceedings{shafi_nonlinear_1991,
	address = {Manhattan, Kansas},
	title = {Nonlinear estimation of growth curve models for germination data analysis},
	booktitle = {Proceedings of the 1991 {Kansas} {State} {University} {Conference} on {Applied} {Statistics} in {Agriculture}},
	publisher = {Kansas State University},
	author = {Shafi, B. and Price, W. J. and Swensen, J. B. and Murray, G. A.},
	editor = {Milliken, George A. and Schwenke, James R.},
	year = {1991},
	pages = {19--42},
}

@article{olvera-carrillo_germination_2003,
	title = {Germination of the hard seed coated \emph{{Opuntia} tomentosa} {SD}, a cacti from the {Mexico} valley},
	volume = {55},
	number = {1},
	journal = {Journal of Arid Environments},
	author = {Olvera-Carrillo, Yadira and Marquez-Guzman, Judith and Barradas, Victor L. and Sanchez-Coronado, Ma Esther and Orozco-Segovia, Alma},
	year = {2003},
	note = {ISBN: 0140-1963
Publisher: Elsevier},
	pages = {29--42},
}

@article{romano_germination_2020,
	title = {Germination data analysis by time-to-event approaches},
	volume = {9},
	language = {en},
	number = {5},
	journal = {Plants},
	author = {Romano, Alessandro and Stevanato, Piergiorgio},
	month = may,
	year = {2020},
	pages = {617},
}

@article{onofri_new_2010,
	title = {A new method for the analysis of germination and emergence data of weed species: {Survival} analysis for germination and emergence data},
	volume = {50},
	language = {en},
	number = {3},
	journal = {Weed Research},
	author = {Onofri, A and Gresta, F and Tei, F},
	month = jun,
	year = {2010},
	pages = {187--198},
}

@article{onofri_cure_2011,
	title = {The cure model: an improved way to describe seed germination?: {The} cure model for seed germination?},
	volume = {51},
	shorttitle = {The cure model},
	language = {en},
	number = {5},
	journal = {Weed Research},
	author = {Onofri, A and Mesgaran, M B and Tei, F and Cousens, R D},
	month = oct,
	year = {2011},
	pages = {516--524},
}

@inproceedings{gunjaca_survival_2000,
	address = {Pula, Croatia},
	title = {Survival analysis of the wheat germination data},
	isbn = {953-96769-1-6},
	booktitle = {Proceedings of the 22nd {International} {Conference} on {Information} {Technology} {Interfaces}},
	publisher = {IEEE},
	author = {Gunjaca, Jerko and Sarcevic, Hrvoje},
	editor = {Kalpic, Damir and Dobric, Vesna Hljuz},
	year = {2000},
	pages = {307--310},
}

@article{manso_modelling_2013,
	title = {Modelling seed germination in forest tree species through survival analysis. {The} \emph{{Pinus} pinea} {L}. case study},
	volume = {289},
	language = {en},
	journal = {Forest Ecology and Management},
	author = {Manso, Ruben and Fortin, Mathieu and Calama, Rafael and Pardos, Marta},
	month = feb,
	year = {2013},
	pages = {515--524},
}

@article{janssen_method_1973,
	title = {A method of recording germination curves},
	volume = {37},
	language = {en},
	number = {4},
	journal = {Annals of Botany},
	author = {Janssen, J. G. M.},
	month = sep,
	year = {1973},
	pages = {705--708},
}

@article{cao_computing_2011,
	title = {Computing statistical indices for hydrothermal times using weed emergence data},
	volume = {149},
	language = {en},
	number = {6},
	journal = {The Journal of Agricultural Science},
	author = {Cao, R. and Francisco-Fernandez, M. and Anand, A. and Bastida, F. and Gonzalez-Andujar, J. L.},
	month = dec,
	year = {2011},
	pages = {701--712},
}

@article{reyes_nonparametric_2016,
	title = {Nonparametric kernel density estimation for general grouped data},
	volume = {28},
	number = {2},
	journal = {Journal of Nonparametric Statistics},
	author = {Reyes, Miguel and Francisco-Fernandez, Mario and Cao, Ricardo},
	month = apr,
	year = {2016},
	note = {Publisher: Taylor \& Francis
\_eprint: https://doi.org/10.1080/10485252.2016.1163348},
	pages = {235--249},
}

@article{reyes_bandwidth_2017,
	title = {Bandwidth selection in kernel density estimation for interval-grouped data},
	volume = {26},
	language = {en},
	number = {3},
	journal = {TEST},
	author = {Reyes, Miguel and Francisco-Fernandez, Mario and Cao, Ricardo},
	month = sep,
	year = {2017},
	pages = {527--545},
}

@article{gonzalez-andujar_comparative_2016,
	title = {A comparative study between nonlinear regression and nonparametric approaches for modelling {Phalaris} paradoxa seedling emergence},
	volume = {56},
	copyright = {(C) 2016 European Weed Research Society},
	language = {en},
	number = {5},
	journal = {Weed Research},
	author = {Gonzalez-Andujar, J. L. and Francisco-Fernandez, M. and Cao, R. and Reyes, M. and Urbano, J. M. and Forcella, F. and Bastida, F.},
	year = {2016},
	pages = {367--376},
}

@article{graziani_hydrothermal_2009,
	title = {Hydrothermal and thermal time models for the invasive grass, \emph{{Arundo} donax}},
	volume = {90},
	language = {en},
	number = {1},
	journal = {Aquatic Botany},
	author = {Graziani, Anthony and Steinmaus, Scott J.},
	month = jan,
	year = {2009},
	pages = {78--84},
}

@article{dumur_use_1990,
	title = {Use of the weibull function to calculate cardinal temperatures in faba bean},
	volume = {41},
	language = {en},
	number = {11},
	journal = {Journal of Experimental Botany},
	author = {Dumur, D. and Pilbeam, C. J. and Craigon, J.},
	year = {1990},
	pages = {1423--1430},
}

@article{chantre_germination_2009,
	title = {Germination parameterization and development of an after-ripening thermal-time model for primary dormancy release of \emph{{Lithospermum} arvense} seeds},
	volume = {103},
	language = {en},
	number = {8},
	journal = {Annals of Botany},
	author = {Chantre, Guillermo R. and Batlla, Diego and Sabbatini, Mario R. and Orioli, Gustavo},
	month = jun,
	year = {2009},
	pages = {1291--1301},
}

@article{dahal_effects_1990-1,
	title = {Effects of priming and endosperm integrity on seed germination rates of tomato genotypes: {I}. {Germination} at suboptimal temperature},
	volume = {41},
	shorttitle = {Effects of priming and endosperm integrity on seed germination rates of tomato genotypes},
	language = {en},
	number = {11},
	journal = {Journal of Experimental Botany},
	author = {Dahal, Peetambar and Bradford, Kent J. and Jones, Richard A.},
	year = {1990},
	pages = {1431--1439},
}

@article{dahal_hydrothermal_1994,
	title = {Hydrothermal time analysis of tomato seed germination at suboptimal temperature and reduced water potential},
	volume = {4},
	language = {en},
	number = {2},
	journal = {Seed Science Research},
	author = {Dahal, Peetambar and Bradford, Kent J.},
	month = jun,
	year = {1994},
	pages = {71--80},
}

@article{dahal_effects_1990,
	title = {Effects of priming and endosperm integrity on seed germination rates of tomato genotypes: {II}. {Germination} at reduced water potential},
	volume = {41},
	shorttitle = {Effects of priming and endosperm integrity on seed germination rates of tomato genotypes},
	language = {en},
	number = {11},
	journal = {Journal of Experimental Botany},
	author = {Dahal, Peetambar and Bradford, Kent J.},
	year = {1990},
	pages = {1441--1453},
}

@article{craufurd_development_1996,
	title = {Development in cowpea (\emph{{Vigna} unguiculata}). {I}. {The} influence of temperature on seed germination and seedling emergence},
	volume = {32},
	language = {en},
	number = {1},
	journal = {Experimental Agriculture},
	author = {Craufurd, P. Q. and Ellis, R. H. and Summerfield, R. R. J. and Menin, L.},
	month = jan,
	year = {1996},
	note = {tex.ids= craufurd\_development\_1996-1
publisher: Cambridge University Press},
	pages = {1--12},
}

@article{covell_influence_1986,
	title = {The influence of temperature on seed germination rate in grain legumes: {I}. {A} comparison of chickpea, lentil, soyabean and cowpea at constant temperatures},
	volume = {37},
	shorttitle = {The influence of temperature on seed germination rate in grain legumes},
	language = {en},
	number = {5},
	journal = {Journal of Experimental Botany},
	author = {Covell, S. and Ellis, R. H. and Roberts, E. H. and Summerfield, R. J.},
	year = {1986},
	pages = {705--715},
}

@article{chejara_factors_2008,
	title = {Factors affecting germination of coolatai grass ( \emph{{Hyparrhenia} hirta} )},
	volume = {56},
	language = {en},
	number = {4},
	journal = {Weed Science},
	author = {Chejara, Vinod K. and Kristiansen, Paul and Whalley, Ralph D. B. and Sindel, Brian M. and Nadolny, Christopher},
	month = aug,
	year = {2008},
	pages = {543--548},
}

@article{bloomberg_hydrothermal_2009,
	title = {Hydrothermal time germination models for radiata pine ( \emph{{Pinus} radiata} {D}. {Don})},
	volume = {19},
	language = {en},
	number = {3},
	journal = {Seed Science Research},
	author = {Bloomberg, M. and Sedcole, J.R. and Mason, E.G. and Buchan, G.},
	month = sep,
	year = {2009},
	pages = {171--182},
}

@article{bradford_water_1994,
	title = {Water relations of lettuce seed thermoinhibition. {I}. {Priming} and endosperm effects on base water potential},
	volume = {4},
	language = {en},
	number = {01},
	journal = {Seed Science Research},
	author = {Bradford, Kent J. and Somasco, Oscar A.},
	month = mar,
	year = {1994},
}

@article{bradford_quantifying_2008,
	title = {Quantifying the sensitivity of barley seed germination to oxygen, abscisic acid, and gibberellin using a population-based threshold model},
	volume = {59},
	language = {en},
	number = {2},
	journal = {Journal of Experimental Botany},
	author = {Bradford, Kent J. and Benech-Arnold, Roberto L. and Come, Daniel and Corbineau, Francoise},
	month = feb,
	year = {2008},
	pages = {335--347},
}

@article{zuk-golaszewska_effect_2007,
	title = {Effect of scarification on seed germination of red clover in hydrotime model terms},
	volume = {35},
	number = {2},
	journal = {Seed Science and Technology},
	author = {Zuk-Golaszewska, K. and Bochenek, A. and Golaszewski, J.},
	month = jul,
	year = {2007},
	pages = {326--336},
}

@article{thomas_interaction_2010,
	title = {The interaction of temperature, water availability and fire cues regulates seed germination in a fire-prone landscape},
	volume = {162},
	language = {en},
	number = {2},
	journal = {Oecologia},
	author = {Thomas, Paul Bengt and Morris, E. Charles and Auld, Tony D. and Haigh, Anthony M.},
	month = feb,
	year = {2010},
	pages = {293--302},
}

@article{rowse_hydrothermal_2003,
	title = {Hydrothermal threshold models can describe the germination response of carrot ( \emph{{Daucus} carota} ) and onion ( \emph{{Allium} cepa} ) seed populations across both sub- and supra-optimal temperatures},
	volume = {158},
	language = {en},
	number = {1},
	journal = {New Phytologist},
	author = {Rowse, Hr and Finch-Savage, We},
	month = apr,
	year = {2003},
	pages = {101--108},
}

@article{alvarado_hydrothermal_2005,
	title = {Hydrothermal time analysis of seed dormancy in true (botanical) potato seeds},
	volume = {15},
	language = {en},
	number = {2},
	journal = {Seed Science Research},
	author = {Alvarado, Veria and Bradford, Kent J.},
	month = jun,
	year = {2005},
	pages = {77--88},
}

@article{zhang_modified_2013,
	title = {A modified thermal time model to predict germination rate of ryegrass and tall fescue at constant temperatures},
	volume = {53},
	language = {en},
	number = {1},
	journal = {Crop Science},
	author = {Zhang, Hongxiang and McGill, Craig R. and Irving, Louis J. and Kemp, Peter D. and Zhou, Daowei},
	month = jan,
	year = {2013},
	pages = {240--249},
}

@article{zambrano-navea_hydrothermal_2013,
	title = {A hydrothermal seedling emergence model for \emph{{Conyza} bonariensis}},
	volume = {53},
	language = {en},
	number = {3},
	journal = {Weed Research},
	author = {Zambrano-Navea, C and Bastida, F and Gonzalez-Andujar, J L},
	editor = {Davis, Adam},
	month = jun,
	year = {2013},
	pages = {213--220},
}

@article{shafii_estimation_2001,
	title = {Estimation of cardinal temperatures in germination data analysis},
	volume = {6},
	language = {en},
	number = {3},
	journal = {Journal of Agricultural, Biological, and Environmental Statistics},
	author = {Shafii, Bahman and Price, William J.},
	month = sep,
	year = {2001},
	pages = {356--366},
}

@article{scott_cold_1985,
	title = {Cold tolerance in tomato. {I}. {Seed} germination and early seedling growth of \emph{{Lycopersicon} esculentum}},
	volume = {65},
	language = {en},
	number = {4},
	journal = {Physiologia Plantarum},
	author = {Scott, S. Jeffrey and Jones, R. A.},
	month = dec,
	year = {1985},
	pages = {487--492},
}

@article{ni_germination_1993,
	title = {Germination and dormancy of abscisic acid- and gibberellin-deficient mutant tomato (\emph{{Lycopersicon} esculentum}) seeds (sensitivity of germination to abscisic acid, gibberellin, and water potential)},
	volume = {101},
	language = {en},
	number = {2},
	journal = {Plant Physiology},
	author = {Ni, B. R. and Bradford, K. J.},
	month = feb,
	year = {1993},
	pages = {607--617},
}

@article{ni_quantitative_1992,
	title = {Quantitative models characterizing seed germination responses to abscisic acid and osmoticum},
	volume = {98},
	language = {en},
	number = {3},
	journal = {Plant Physiology},
	author = {Ni, Bing-Rui and Bradford, Kent J.},
	month = mar,
	year = {1992},
	pages = {1057--1068},
}

@article{kebreab_modelling_1999,
	title = {Modelling the effects of water stress and temperature on germination rate of \emph{{Orobanche} aegyptiaca} seeds},
	volume = {50},
	language = {en},
	number = {334},
	journal = {Journal of Experimental Botany},
	author = {Kebreab, E. and Murdoch, A. J.},
	month = may,
	year = {1999},
	pages = {655--664},
}

@article{kebreab_quantitative_1999,
	title = {A quantitative model for loss of primary dormancy and induction of secondary dormancy in imbibed seeds of \emph{{Orobanche}} spp},
	volume = {50},
	language = {en},
	number = {331},
	journal = {Journal of Experimental Botany},
	author = {Kebreab, E. and Murdoch, A. J.},
	month = feb,
	year = {1999},
	pages = {211--219},
}

@article{ellis_safe_1983,
	title = {Safe procedures for the removal of rice seed dormancy},
	volume = {11},
	journal = {Seed Science and Technology},
	author = {Ellis, R. H. and Hong, T. D. and Roberts, E. H.},
	year = {1983},
	pages = {77--112},
}

@article{gianinetti_seed_2007,
	title = {Seed dormancy in red rice. {XII}: {Population}-based analysis of dry-afterripening with a hydrotime model},
	volume = {17},
	number = {4},
	journal = {Seed Science Research},
	author = {Gianinetti, Alberto and Cohn, Marc Alan},
	year = {2007},
	note = {tex.ids= gianinetti\_seed\_2007-1
ISBN: 0960-2585
publisher: Cambridge University Press},
	pages = {253},
}

@article{bradford_applications_2004,
	title = {Applications of hydrotime analysis in seed testing},
	journal = {Seed Technology},
	author = {Bradford, Kent J. and Still, David W.},
	year = {2004},
	note = {ISBN: 1096-0724
Publisher: JSTOR},
	pages = {75--85},
}

@inproceedings{dahal_concept_1993,
	address = {Paris},
	title = {The concept of hydrothermal time in seed germination and priming},
	booktitle = {Proceedings of the {Fourth} {International} {Workshop} on {Seeds}: {Basic} and {Applied} {Aspects} of {Seed} {Biology}, {Vol}. 3.},
	publisher = {Association pour la Formation Professionnelle de l'Interprofession Semences},
	author = {Dahal, P. and Bradford, K. J. and Haigh, A. M.},
	editor = {Come, D and Corbineau, F},
	year = {1993},
	pages = {1009--1014},
}

@article{kaplan_nonparametric_1958,
	title = {Nonparametric estimation from incomplete observations},
	volume = {53},
	number = {282},
	journal = {Journal of the American Statistical Association},
	author = {Kaplan, E. L. and Meier, Paul},
	month = jun,
	year = {1958},
	note = {Publisher: Taylor \& Francis
\_eprint: https://www.tandfonline.com/doi/pdf/10.1080/01621459.1958.10501452},
	pages = {457--481},
}

@article{hunter_analysis_1984,
	title = {The analysis of data from germination tests},
	volume = {102},
	number = {1},
	journal = {Journal of Agricultural Science},
	author = {Hunter, E. A. and Glasbey, C. A. and Naylor, R. E. L.},
	year = {1984},
	pages = {207--213},
}

@inproceedings{finch-savage_use_2000,
	address = {Merida, Mexico},
	title = {Use of threshold germination models under variable field conditions},
	language = {English},
	booktitle = {Seed biology: {Advances} and {Applications}. {Proceedings} of the {Sixth} {International} {Workshop} on {Seeds}, {Merida}, {Mexico}, 1999.},
	publisher = {CABI, Wallingford, UK},
	author = {Finch-Savage, W. E. and Phelps, K. and Peach, L. and Steckel, J. R. A.},
	editor = {Black, Michael and Bradford,, Kent J. and Vazquez-Ramos, Jorge},
	year = {2000},
	pages = {489--497},
}

@article{golaszewski_computational_2008,
	title = {A computational procedure for hydrotime concept of seed germination},
	volume = {45},
	number = {1},
	journal = {Biometrical Letters},
	author = {Golaszewski, Janusz and Bochenek, Anna},
	year = {2008},
	pages = {55--67},
}

@article{watt_development_2010,
	title = {Development of a hydrothermal time seed germination model which uses the {Weibull} distribution to describe base water potential},
	volume = {221},
	language = {en},
	number = {9},
	journal = {Ecological Modelling},
	author = {Watt, Michael S. and Xu, Vega and Bloomberg, Mark},
	month = may,
	year = {2010},
	pages = {1267--1272},
}

@article{washitani_convenient_1987,
	title = {A convenient screening test system and a model for thermal germination responses of wild plant seeds: {Behaviour} of model and real seeds in the system},
	volume = {10},
	language = {en},
	number = {7},
	journal = {Plant, Cell \& Environment},
	author = {Washitani, I.},
	year = {1987},
	pages = {587--598},
}

@article{rawlins_predicting_2012,
	title = {Predicting germination in semi-arid wildland seedbeds {II}. {Field} validation of wet thermal-time models},
	volume = {76},
	language = {en},
	journal = {Environmental and Experimental Botany},
	author = {Rawlins, Jennifer K. and Roundy, Bruce A. and Egget, Dennis and Cline, Nathan},
	month = feb,
	year = {2012},
	pages = {68--73},
}

@article{rowse_model_1999,
	title = {A model of the effects of water stress on seed advancement and germination},
	volume = {143},
	language = {en},
	number = {2},
	journal = {New Phytologist},
	author = {Rowse, H. R. and McKEE, J. M. T. and Higgs, E. C.},
	year = {1999},
	pages = {273--279},
}

@article{vleeshouwers_modelling_2000,
	title = {Modelling field emergence patterns in arable weeds},
	volume = {148},
	language = {en},
	number = {3},
	journal = {New Phytologist},
	author = {Vleeshouwers, L. M. and Kropff, M. J.},
	year = {2000},
	pages = {445--457},
}

@article{onofri_experimental_2014,
	title = {Experimental design and parameter estimation for threshold models in seed germination},
	volume = {54},
	language = {en},
	number = {5},
	journal = {Weed Research},
	author = {Onofri, A and Mesgaran, M B and Neve, P and Cousens, R D},
	editor = {Bastiaans, Lammert},
	month = oct,
	year = {2014},
	pages = {425--435},
}

@article{onofri_hydrothermal-time--event_2018,
	title = {Hydrothermal-time-to-event models for seed germination},
	volume = {101},
	language = {en},
	journal = {European Journal of Agronomy},
	author = {Onofri, Andrea and Benincasa, Paolo and Mesgaran, Mohsen B. and Ritz, Christian},
	month = nov,
	year = {2018},
	pages = {129--139},
}

@inproceedings{phelps_statistical_1997,
	address = {Dordrecht},
	series = {Current {Plant} {Science} and {Biotechnology} in {Agriculture}},
	title = {A statistical perspective on threshold type germination models},
	isbn = {978-94-011-5716-2},
	language = {en},
	booktitle = {Basic and {Applied} {Aspects} of {Seed} {Biology}: {Proceedings} of the {Fifth} {International} {Workshop} on {Seeds}, {Reading}, 1995},
	publisher = {Springer Netherlands},
	author = {Phelps, K. and Finch-Savage, W. E.},
	editor = {Ellis, R. H. and Black, M. and Murdoch, A. J. and Hong, T. D.},
	year = {1997},
	pages = {361--368},
}

@article{moltchanova_comparison_2020,
	title = {Comparison of three different statistical approaches (non-linear least-squares regression, survival analysis and {Bayesian} inference) in their usefulness for estimating hydrothermal time models of seed germination},
	volume = {30},
	language = {en},
	number = {1},
	journal = {Seed Science Research},
	author = {Moltchanova, Elena and Sharifiamina, Shirin and Moot, Derrick J. and Shayanfar, Ali and Bloomberg, Mark},
	month = mar,
	year = {2020},
	pages = {64--72},
}

@article{mesgaran_importance_2013,
	title = {Importance of distribution function selection for hydrothermal time models of seed germination},
	volume = {53},
	language = {en},
	number = {2},
	journal = {Weed Research},
	author = {Mesgaran, M B and Mashhadi, H R and Alizadeh, H and Hunt, J and Young, K R and Cousens, R D},
	editor = {Andersson, Lars},
	month = apr,
	year = {2013},
	pages = {89--101},
}

@article{leon_characterization_2015,
	title = {Characterization and modeling of itchgrass (\emph{{Rottboellia} cochinchinensis}) biphasic seedling emergence patterns in the tropics},
	volume = {63},
	number = {3},
	journal = {Weed Science},
	author = {Leon, Ramon G. and Izquierdo, Jordi and Gonzalez-Andujar*, Jose Luis},
	month = jul,
	year = {2015},
	pages = {623--630},
}

@article{mesgaran_water_2017,
	title = {Water availability shifts the optimal temperatures for seed germination: {A} modelling approach},
	volume = {351},
	language = {en},
	journal = {Ecological Modelling},
	author = {Mesgaran, Mohsen B. and Onofri, Andrea and Mashhadi, Hamid R. and Cousens, Roger D.},
	month = may,
	year = {2017},
	pages = {87--95},
}

@article{kochy_hydrothermal_2007,
	title = {Hydrothermal time model of germination: {Parameters} for 36 {Mediterranean} annual species based on a simplified approach},
	volume = {8},
	shorttitle = {Hydrothermal time model of germination},
	language = {en},
	number = {2},
	journal = {Basic and Applied Ecology},
	author = {Kochy, Martin and Tielborger, Katja},
	month = mar,
	year = {2007},
	pages = {171--182},
}

@article{hardegree_hydrothermal_2015,
	title = {Hydrothermal germination models: {Comparison} of two data-fitting approaches with probit optimization},
	volume = {55},
	copyright = {Copyright (C) by the Crop Science Society of America, Inc.},
	shorttitle = {Hydrothermal germination models},
	language = {en},
	number = {5},
	journal = {Crop Science},
	author = {Hardegree, Stuart P. and Walters, Christina T. and Boehm, Alex R. and Olsoy, Peter J. and Clark, Patrick E. and Pierson, Frederick B.},
	year = {2015},
	pages = {2276--2290},
}

@article{leblanc_calibration_2004,
	title = {Calibration and validation of a common lambsquarters (\emph{{Chenopodium} album}) seedling emergence model},
	volume = {52},
	number = {1},
	journal = {Weed Science},
	author = {Leblanc, Maryse L. and Cloutier, Daniel C. and Stewart, Katrine A. and Hamel, Chantal},
	year = {2004},
	pages = {61--66},
}

@article{hardegree_predicting_2006,
	title = {Predicting germination response to temperature. {I}. {Cardinal}-temperature models and subpopulation-specific regression},
	volume = {97},
	language = {en},
	number = {6},
	journal = {Annals of Botany},
	author = {Hardegree, Stuart P.},
	month = jun,
	year = {2006},
	pages = {1115--1125},
}

@article{hardegree_hydrothermal_2018,
	title = {Hydrothermal germination models: {Assessment} of the wet-thermal approximation of potential field response},
	volume = {58},
	shorttitle = {Hydrothermal germination models},
	language = {en},
	number = {5},
	journal = {Crop Science},
	author = {Hardegree, Stuart P. and Roundy, Bruce A. and Walters, Christina T. and Reeves, Patrick A. and Richards, Christopher M. and Moffet, Corey A. and Sheley, Roger L. and Flerchinger, Gerald N.},
	month = sep,
	year = {2018},
	pages = {2042--2049},
}

@article{gummerson_effect_1986,
	title = {The effect of constant temperatures and osmotic potentials on the germination of sugar beet},
	volume = {37},
	number = {6},
	journal = {Journal of Experimental Botany},
	author = {Gummerson, R. J.},
	month = jun,
	year = {1986},
	pages = {729--741},
}

@article{gianinetti_basic_2020,
	title = {Basic features of the analysis of germination data with generalized linear mixed models},
	volume = {5},
	language = {en},
	number = {1},
	journal = {Data},
	author = {Gianinetti, Alberto},
	month = jan,
	year = {2020},
	pages = {6},
}

@article{garcia-huidobro_time_1982,
	title = {Time, temperature and germination of pearl millet (\emph{{Pennisetum} typhoides} {S}. \& {H}.): {I}. {Constant} temperature},
	volume = {33},
	number = {2},
	journal = {Journal of Experimental Botany},
	author = {Garcia-Huidobro, J. and Monteith, J. L. and Squire, G. R.},
	month = apr,
	year = {1982},
	pages = {288--296},
}

@article{bradford_interpreting_2018,
	title = {Interpreting biological variation: {Seeds}, populations and sensitivity thresholds},
	volume = {28},
	shorttitle = {Interpreting biological variation},
	language = {en},
	number = {3},
	journal = {Seed Science Research},
	author = {Bradford, Kent J.},
	month = sep,
	year = {2018},
	pages = {158--167},
}

@article{bradford_population-based_1993,
	title = {A population-based threshold model describing the relationship between germination rates and seed deterioration},
	volume = {44},
	number = {7},
	journal = {Journal of Experimental Botany},
	author = {Bradford, Kent J. and Tarquis, Ana M. and Duran, Jose M.},
	month = jul,
	year = {1993},
	pages = {1225--1234},
}

@article{colbach_construction_2007,
	title = {Construction and evaluation of {ALOMYSYS} modelling the effects of cropping systems on the blackgrass life-cycle: {From} seedling to seed production},
	volume = {201},
	shorttitle = {Construction and evaluation of {ALOMYSYS} modelling the effects of cropping systems on the blackgrass life-cycle},
	language = {en},
	number = {3},
	journal = {Ecological Modelling},
	author = {Colbach, N. and Chauvel, B. and Gauvrit, C. and Munier-Jolain, N. M.},
	month = mar,
	year = {2007},
	pages = {283--300},
}

@article{bradford_threshold_2005,
	title = {Threshold models applied to seed germination ecology},
	journal = {New Phytologist},
	author = {Bradford, Kent J.},
	year = {2005},
	note = {ISBN: 0028-646X
Publisher: JSTOR},
	pages = {338--341},
}

@inproceedings{bradford_hydrotime_1997,
	address = {Dordrecht},
	series = {Current {Plant} {Science} and {Biotechnology} in {Agriculture}},
	title = {The hydrotime concept in seed germination and dormancy},
	isbn = {978-94-011-5716-2},
	language = {en},
	booktitle = {Basic and {Applied} {Aspects} of {Seed} {Biology}: {Proceedings} of the {Fifth} {International} {Workshop} on {Seeds}, {Reading}, 1995},
	publisher = {Springer Netherlands},
	author = {Bradford, K. J.},
	editor = {Ellis, R. H. and Black, M. and Murdoch, A. J. and Hong, T. D.},
	year = {1997},
	pages = {349--360},
}

@article{bradford_water_1990,
	title = {A water relations analysis of seed germination rates},
	volume = {94},
	number = {2},
	journal = {Plant Physiol.},
	author = {Bradford, Kent J.},
	month = oct,
	year = {1990},
	pages = {840--849},
}

@article{bradford_applications_2002,
	title = {Applications of hydrothermal time to quantifying and modeling seed germination and dormancy},
	volume = {50},
	number = {2},
	journal = {Weed Science},
	author = {Bradford, Kent J.},
	year = {2002},
	pages = {248--260},
}

@article{boddy_population-based_2012,
	title = {Population-based threshold models describe weed germination and emergence patterns across varying temperature, moisture and oxygen conditions},
	volume = {49},
	language = {en},
	number = {6},
	journal = {Journal of Applied Ecology},
	author = {Boddy, Louis G. and Bradford, Kent J. and Fischer, Albert J.},
	editor = {Firn, Jennifer},
	month = dec,
	year = {2012},
	pages = {1225--1236},
}

@article{bakhshandeh_population-based_2020,
	title = {Population-based threshold models: {A} reliable tool for describing aged seeds response of rapeseed under salinity and water stress},
	volume = {176},
	shorttitle = {Population-based threshold models},
	language = {en},
	journal = {Environmental and Experimental Botany},
	author = {Bakhshandeh, Esmaeil and Jamali, Mohsen},
	month = aug,
	year = {2020},
	pages = {104077},
}

@incollection{bradford_water_1995,
	address = {New York},
	title = {Water relations in seed germination},
	booktitle = {Marcel {Dekker} {Inc}., {New} {York}},
	publisher = {Marcel Dekker Inc.},
	author = {Bradford, K. J.},
	editor = {Kigel, J. and Galili, G.},
	year = {1995},
	pages = {291--295},
}

@article{allen_when_2003,
	title = {When and how many? {Hydrothermal} models and the prediction of seed germination},
	volume = {158},
	shorttitle = {When and how many?},
	number = {1},
	journal = {The New Phytologist},
	author = {Allen, Phil},
	year = {2003},
	pages = {1--3},
}

@article{atashi_application_2015,
	title = {Application of a hydrothermal time seed germination model using the weibull distribution to describe base water potential in zucchini (\emph{{Cucurbita} pepo} l.)},
	volume = {34},
	language = {en},
	number = {1},
	journal = {Journal of Plant Growth Regulation},
	author = {Atashi, Sadegh and Bakhshandeh, Esmaeil and Mehdipour, Mozde and Jamali, Mohsen and Teixeira da Silva, Jaime A.},
	month = mar,
	year = {2015},
	pages = {150--157},
}

@incollection{allen_modeling_2007,
	title = {Modeling of seed dormancy},
	copyright = {Copyright (C) 2007 by Blackwell Publishing Ltd},
	isbn = {978-0-470-98884-8},
	language = {en},
	booktitle = {Annual {Plant} {Reviews} {Volume} 27: {Seed} {Development}, {Dormancy} and {Germination}},
	publisher = {John Wiley \& Sons, Ltd},
	author = {Allen, Phil S. and Benech-Arnold, Roberto L. and Batlla, Diego and Bradford, Kent J.},
	editor = {Bradford, Kent J. and Nonogaki, Hiro},
	year = {2007},
	note = {Section: 4
\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/9780470988848.ch4},
	pages = {72--112},
}

@article{alvarado_hydrothermal_2002,
	title = {A hydrothermal time model explains the cardinal temperatures for seed germination},
	volume = {25},
	language = {en},
	number = {8},
	journal = {Plant, Cell \& Environment},
	author = {Alvarado, V. and Bradford, K. J.},
	year = {2002},
	pages = {1061--1069},
}

@article{jardim_amorim_use_2021,
	title = {The use of the generalized linear model to assess the speed and uniformity of germination of corn and soybean seeds},
	volume = {11},
	language = {en},
	number = {3},
	journal = {Agronomy},
	author = {Jardim Amorim, Deoclecio and Pereira dos Santos, Amanda Rithieli and Nunes da Piedade, Gabriela and Quelvia de Faria, Rute and Amaral da Silva, Edvaldo Aparecido and Pereira Sartori, Maria Marcia},
	month = mar,
	year = {2021},
	pages = {588},
}

@article{rathod_introduction_2020,
	title = {Introduction to survival analysis and application in agricultural research},
	volume = {1},
	number = {4},
	journal = {Food and Scientific Reports},
	author = {Rathod, Santosha and Saha, Amit and Sinha, Kanchan},
	year = {2020},
	pages = {28--30},
}

@article{berry_curve_1988,
	title = {Curve fitting of germination data using the {Richards} function},
	volume = {11},
	language = {en},
	number = {3},
	journal = {Plant, Cell \& Environment},
	author = {Berry, G. J. and Cawood, R. J. and Flood, R. G.},
	year = {1988},
	pages = {183--188},
}

@article{hsu_mathematical_1984,
	title = {A mathematical model to utilize the logistic function in germination and seedling growth},
	volume = {35},
	number = {11},
	journal = {Journal of Experimental Botany},
	author = {Hsu, F. H. and Nelson, C. J. and Chow, W. S.},
	month = nov,
	year = {1984},
	pages = {1629--1640},
}

@article{onofri_analysing_2019,
	title = {Analysing censored data in agricultural research: {A} review with examples and software tips},
	volume = {174},
	shorttitle = {Analysing censored data in agricultural research},
	language = {en},
	number = {1},
	journal = {Annals of Applied Biology},
	author = {Onofri, Andrea and Piepho, Hans-Peter and Kozak, Marcin},
	year = {2019},
	pages = {3--13},
}

@article{roh_maturity_2004,
	title = {Maturity and temperature stratification affect the germination of \emph{{Styrax} japonicus} seeds},
	volume = {79},
	number = {4},
	journal = {The Journal of Horticultural Science and Biotechnology},
	author = {Roh, Mark and Bentz, Jo-Ann and Wang, Paul and Li, Ercheng and Koshioka, Masaji},
	year = {2004},
	pages = {645--651},
}

@article{vallance_studies_1950,
	title = {Studies on the germination of the seeds of \emph{{Striga} hermonthica} {I}. {The} influence of moisture-treatment, stimulant-dilution, and after-ripening on germination},
	volume = {14},
	number = {55},
	journal = {Annals of Botany},
	author = {Vallance, KB},
	year = {1950},
	pages = {347--363},
}

@article{richardson_use_2018,
	title = {Use of auto-germ to model germination timing in the sagebrush-steppe},
	volume = {8},
	language = {en},
	number = {23},
	journal = {Ecology and Evolution},
	author = {Richardson, William C. and Whitaker, Dallin R. and Sant, Kyler P. and Barney, Nicholas S. and Call, Ryan S. and Roundy, Bruce A. and Aanderud, Zachary T. and Madsen, Matthew D.},
	month = dec,
	year = {2018},
	pages = {11533--11542},
}

@article{heydecker_clarity_1966,
	title = {Clarity in recording germination data},
	volume = {210},
	journal = {Nature},
	author = {Heydecker, Walter},
	year = {1966},
	pages = {753--754},
}

@article{talska_comparison_2020,
	title = {A comparison of seed germination coefficients using functional regression},
	volume = {8},
	language = {en},
	number = {8},
	journal = {Applications in Plant Sciences},
	author = {Talska, Renata and Machalova, Jitka and Smykal, Petr and Hron, Karel},
	year = {2020},
	pages = {e11366},
}

@article{hradilova_variation_2019,
	title = {Variation in wild pea (\emph{{Pisum} sativum} subsp. \emph{elatius}) seed dormancy and its relationship to the environment and seed coat traits},
	volume = {7},
	language = {en},
	journal = {PeerJ},
	author = {Hradilova, Iveta and Duchoslav, Martin and Brus, Jan and Pechanec, Vilem and Hybl, Miroslav and Kopecky, Pavel and Smrzova, Lucie and Stefelova, Nikola and Vaclavek, Tadeas and Bariotakis, Michael and Machalova, Jitka and Hron, Karel and Pirintsos, Stergios and Smykal, Petr},
	month = jan,
	year = {2019},
	pages = {e6263},
}

@phdthesis{hradilova_seed_2019,
	address = {Olomouc, Czech Republic},
	type = {{PhD} {Thesis}},
	title = {Seed dormancy as the key domestication trait in legumes},
	school = {Palacky University Olomouc},
	author = {Hradilova, Iveta},
	year = {2019},
}

@article{lehle_quantification_1982,
	title = {Quantification of allelopathic potential of sorghum residues by novel indexing of {Richards}' function fitted to cumulative cress seed germination curves},
	volume = {69},
	number = {5},
	journal = {Plant Physiology},
	author = {Lehle, Fredric R. and Putnam, Alan R.},
	month = may,
	year = {1982},
	pages = {1212--1216},
}

@article{bonner_weibull_1976,
	title = {The {Weibull} function: {A} new method of comparing seed vigor},
	volume = {1},
	shorttitle = {The weibull function},
	number = {1},
	journal = {Journal of Seed Technology},
	author = {Bonner, F. T. and Dell, T. R.},
	year = {1976},
	pages = {96--103},
}

@article{becerra-vazquez_seed_2018,
	title = {Seed longevity of five tropical species from {South}-{Eastern} {Mexico}: {Changes} in seed germination during storage},
	volume = {11},
	language = {en},
	journal = {Tropical Conservation Science},
	author = {Becerra-Vazquez, Angel G. and Sanchez-Nieto, Sobeida and Coates, Rosamond and Flores-Ortiz, Cesar M. and Orozco-Segovia, Alma},
	month = jan,
	year = {2018},
	pages = {194008291877948},
}

@article{brown_germination_1987,
	title = {Germination of \emph{{Aristida} armata} under constant and alternating temperatures and its analysis with the cumulative weibull distribution as a model},
	volume = {35},
	language = {en},
	number = {5},
	journal = {Australian Journal of Botany},
	author = {Brown, R. F.},
	year = {1987},
	pages = {581--591},
}

@article{larsen_use_2004,
	title = {Use of germination curves to describe variation in germination characteristics in three turfgrass species},
	volume = {44},
	language = {en},
	number = {3},
	journal = {Crop Science},
	author = {Larsen, Soren Ugilt and Bibby, Bo Martin},
	year = {2004},
	pages = {891--899},
}

@article{oneill_fitting_2004,
	title = {Fitting and comparing seed germination models with a focus on the inverse normal distribution},
	volume = {46},
	language = {en},
	number = {3},
	journal = {Australian \& New Zealand Journal of Statistics},
	author = {O'Neill, Michael E. and Thomson, Peter C. and Jacobs, Brent C. and Brain, Phil and Butler, Ruth C. and Turner, Heather and Mitakda, Bernadetha},
	year = {2004},
	pages = {349--366},
}

@article{lambers_benefits_2005,
	title = {The benefits of seed banking for red maple (\emph{{Acer} rubrum}): {Maximizing} seedling recruitment},
	volume = {35},
	shorttitle = {The benefits of seed banking for red maple ({Acer} rubrum)},
	number = {4},
	journal = {Canadian Journal of Forest Research},
	author = {Lambers, Janneke Hille Ris and Clark, James S},
	month = apr,
	year = {2005},
	pages = {806--813},
}

@article{guedes_nonlinear_2014,
	title = {Nonlinear models applied to seed germination of \emph{{Rhipsalis} cereuscula} {Haw} ({Cactaceae})},
	volume = {36},
	number = {4},
	journal = {Acta Scientiarum. Technology},
	author = {Guedes, Terezinha Aparecida and Rossi, Robson Marcelo and Martins, Ana Beatriz Tozzo and Janeiro, Vanderly and Carneiro, Jose W. P.},
	year = {2014},
	pages = {651--656},
}

@article{ochuodho_statistical_2006,
	title = {Statistical evaluation of the germination of \emph{{Cleome} gynandra} {L}. seeds},
	volume = {23},
	number = {4},
	journal = {South African Journal of Plant and Soil},
	author = {Ochuodho, J. A. and Modi, A. T.},
	year = {2006},
	pages = {310--315},
}

@article{torres_analysis_1989,
	title = {Analysis of germination curves of aged fennel seeds by mathematical models},
	volume = {29},
	language = {en},
	number = {3},
	journal = {Environmental and Experimental Botany},
	author = {Torres, M. and Frutos, G.},
	month = jul,
	year = {1989},
	pages = {409--415},
}

@article{thornley_germination_1977,
	title = {Germination of seeds and spores},
	volume = {41},
	number = {176},
	journal = {Annals of Botany},
	author = {Thornley, J. H. M.},
	year = {1977},
	pages = {1363--1365},
}

@article{campbell_new_1979,
	title = {A new basis for characterizing germination},
	volume = {4},
	number = {2},
	journal = {Journal of Seed Technology},
	author = {Campbell, Robert K. and Sorensen, Frank C.},
	year = {1979},
	pages = {24--34},
}

@article{ketabi_estimation_2016,
	title = {Estimation of the cardinal temperatures for germination of four \emph{{Satureja}} species growing in {Iran}},
	volume = {62},
	number = {1},
	journal = {Herba Polonica},
	author = {Ketabi, Hamed Zarif and Khazaei, Hamid Reza and Nezami, Ahmad and Aghadaei, S. R. T.},
	year = {2016},
}

@article{schimpf_representation_1977,
	title = {Representation of germination curves with the logistic function},
	volume = {41},
	number = {6},
	journal = {Annals of Botany},
	author = {Schimpf, D. J. and Flint, S. D. and Palmblad, I. G.},
	month = nov,
	year = {1977},
	pages = {1357--1360},
}

@article{bentsink_natural_2010,
	title = {Natural variation for seed dormancy in {Arabidopsis} is regulated by additive genetic and molecular pathways},
	volume = {107},
	number = {9},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Bentsink, Leonie and Hanson, Johannes and Hanhart, Corrie J. and Blankestijn-de Vries, Hetty and Coltrane, Colin and Keizer, Paul and El-Lithy, Mohamed and Alonso-Blanco, Carlos and de Andres, M. Teresa and Reymond, Matthieu and van Eeuwijk, Fred and Smeekens, Sjef and Koornneef, Maarten},
	month = mar,
	year = {2010},
	pages = {4264--4269},
}

@article{xu_germination_2016,
	title = {Germination and early seedling growth of \emph{{Pinus} densata} {Mast}. provenances},
	volume = {27},
	language = {en},
	number = {2},
	journal = {Journal of Forestry Research},
	author = {Xu, Yulan and Cai, Nianhui and He, Bin and Zhang, Ruili and Zhao, Wei and Mao, Jianfeng and Duan, Anan and Li, Yue and Woeste, Keith},
	month = apr,
	year = {2016},
	pages = {283--294},
}

@article{wu_effects_2001,
	title = {Effects of moist chilling and solid matrix priming on germination of loblolly pine (\emph{{Pinus} taeda} {L}.) seeds},
	volume = {21},
	language = {en},
	number = {1},
	journal = {New Forests},
	author = {Wu, Luguang and Hallgren, Stephen W. and Ferris, David M. and Conway, Kenneth E.},
	month = jan,
	year = {2001},
	pages = {1--16},
}

@article{gonzalez2002effects,
	title = {Effects of priming on germination of \emph{{Buddleja} cordata} ssp. \emph{cordata} ({Loganiaceae}) seeds and possible ecological significance},
	volume = {30},
	number = {3},
	journal = {Seed Science and Technology},
	author = {Gonzalez-Zertuche, L and Orozco-Segovia, A and Baskin, C and Baskin, JM},
	year = {2002},
	pages = {535--548},
}

@article{takahashi1996desempenho,
	title = {Desempenho germinativo de sementes de \emph{{Stevia} rebaudiana} ({Bert}) {Bertoni} sob diferentes temperaturas},
	volume = {18},
	number = {1},
	journal = {Revista Brasileira de Sementes},
	author = {Takahashi, Luciana and Melges, Elena and Carneiro, Jose Walter P.},
	year = {1996},
	pages = {6--9},
}

@article{cristaudo_assessment_2014,
	title = {Assessment of daily heat pulse regimes on the germination of six \emph{{Amaranthus}} species},
	volume = {54},
	language = {en},
	number = {4},
	journal = {Weed Research},
	author = {Cristaudo, A. and Gresta, F. and Catara, S. and Mingo, A.},
	year = {2014},
	pages = {366--376},
}

@article{dias_describing_2001,
	title = {Describing phytotoxic effects on cumulative germination},
	volume = {27},
	language = {en},
	number = {2},
	journal = {Journal of Chemical Ecology},
	author = {Dias, L. S.},
	month = feb,
	year = {2001},
	pages = {411--418},
}

@article{larsen_use_2004-2,
	title = {Use of the hydrothermal time model to analyse interacting effects of water and temperature on germination of three grass species},
	volume = {14},
	language = {en},
	number = {1},
	journal = {Seed Science Research},
	author = {Larsen, Soren Ugilt and Bailly, Christophe and Come, Daniel and Corbineau, Francoise},
	month = mar,
	year = {2004},
	pages = {35--50},
}

@article{sri-ngernyuang_survival_2003,
	title = {Survival and germination of an experimental seed bank population of two species of {Lauraceae} in a tropical montane forest in {Thailand}},
	volume = {8},
	language = {en},
	number = {4},
	journal = {Journal of Forest Research},
	author = {Sri-ngernyuang, Kriangsak and Chai-Udom, Kwanchai and Kanzaki, Mamoru and Ohkubo, Tatsuhiro and Yamakura, Takuo},
	month = nov,
	year = {2003},
	pages = {311--316},
}

@article{hageseth_kinetics_1975,
	title = {Kinetics and thermodynamics of isothermal seed germination},
	volume = {53},
	language = {en},
	number = {1},
	journal = {Journal of Theoretical Biology},
	author = {Hageseth, G. T. and Joyner, R. D.},
	month = sep,
	year = {1975},
	pages = {51--65},
}

@article{berrie_use_1981,
	title = {The use of population parameters in the analysis of germination of lettuce seed},
	volume = {51},
	language = {en},
	number = {2},
	journal = {Physiologia Plantarum},
	author = {Berrie, Alex. M. M. and Taylor, Graham C. D.},
	year = {1981},
	pages = {229--233},
}

@article{orozco-segovia_mathematical_1996,
	title = {A mathematical model that uses {Gaussian} distribution to analyze the germination of \emph{{Manfreda} brachystachya} ({Agavaceae}) in a thermogradient},
	volume = {98},
	language = {en},
	number = {3},
	journal = {Physiologia Plantarum},
	author = {Orozco-Segovia, Alma and Gonzalez-Zertuche, Lourdes and Mendoza, Ana and Orozco, Susana},
	year = {1996},
	pages = {431--438},
}

@article{quinones-huatangari_analysis_2023,
	title = {Analysis of germination curves of \emph{{Cinchona} officinalis} {L}. ({Rubiaceae})using sigmoidal mathematical models},
	volume = {2023},
	language = {en},
	journal = {International Journal of Agronomy},
	author = {Quinones-Huatangari, Lenin and Huaccha-Castillo, Annick Estefany and Fernandez-Zarate, Franklin Hitler and Morales-Rojas, Eli and Marrufo-Jimenez, Jenny Del Milagro and Mejia-Cordova, Leslie Lizbeth},
	month = jan,
	year = {2023},
	pages = {e1360608},
}

@article{mees_generalized_1984,
	title = {The generalized gamma distribution: {A} model for seed germination curves [{Weibull} model]},
	shorttitle = {The generalized gamma distribution},
	language = {French},
	journal = {Biometrie - Praximetrie},
	author = {Mees, E. and Gerard, G.},
	year = {1984},
}

@article{bould_model_1981,
	title = {A model for seed germination curves},
	language = {English},
	journal = {Seed Science and Technology},
	author = {Bould, A. and Abrol, B. K.},
	year = {1981},
}

@article{bridges_modeling_1989,
	title = {Modeling distributions of crop and weed seed germination time},
	volume = {37},
	number = {5},
	journal = {Weed Science},
	author = {Bridges, David C. and Wu, Hsin-I and Sharpe, Peter J. H. and Chandler, James M.},
	year = {1989},
	pages = {724--729},
}

@article{chen_estimation_2021,
	title = {Estimation of thermal time model parameters for seed germination in 15 species: {The} importance of distribution function},
	volume = {31},
	shorttitle = {Estimation of thermal time model parameters for seed germination in 15 species},
	language = {en},
	number = {2},
	journal = {Seed Science Research},
	author = {Chen, Dali and Chen, Xianglai and Wang, Jingjing and Zhang, Zuxin and Wang, Yan and Jia, Cunzhi and Hu, Xiaowen},
	month = jun,
	year = {2021},
	pages = {83--90},
}

@article{brown_problems_1986,
	title = {Problems in applying {Thornley}'s model of germination},
	volume = {57},
	number = {1},
	journal = {Annals of Botany},
	author = {Brown, R. F. and Mayer, D. G.},
	month = jan,
	year = {1986},
	pages = {49--53},
}

@article{ellis_influence_1987,
	title = {The influence of temperature on seed germination rate in grain legumes: {III}. {A} comparison of five faba bean genotypes at constant temperatures using a new screening method},
	volume = {38},
	shorttitle = {The influence of temperature on seed germination rate in grain legumes},
	language = {en},
	number = {6},
	journal = {Journal of Experimental Botany},
	author = {Ellis, R. H. and Simon, G. and Covell, S.},
	year = {1987},
	pages = {1033--1043},
}

@article{white_influence_1993,
	title = {The influence of temperature on seed germination in cultivars of common bean},
	volume = {44},
	language = {en},
	number = {12},
	journal = {Journal of Experimental Botany},
	author = {White, Jeffrey W. and Montes-R, Consuelo},
	year = {1993},
	pages = {1795--1800},
}

@article{roman_modeling_1999-1,
	title = {Modeling germination and seedling elongation of common lambsquarters (\emph{{Chenopodium} album})},
	volume = {47},
	language = {en},
	number = {2},
	journal = {Weed Science},
	author = {Roman, Erivelton S. and Thomas, A. Gordon and Murphy, Stephen D. and Swanton, Clarence J.},
	month = apr,
	year = {1999},
	pages = {149--155},
}

@article{villa-morales_stochastic_2020,
	title = {A stochastic model for germination},
	volume = {27},
	number = {2},
	journal = {Revista de Matematica: Teoria y Aplicaciones},
	author = {Villa-Morales, Jose},
	month = jun,
	year = {2020},
	pages = {355--365},
}

@article{thornley_germination_1986,
	title = {A germination model: {Responses} to time and temperature},
	volume = {123},
	shorttitle = {A germination model},
	language = {en},
	number = {4},
	journal = {Journal of Theoretical Biology},
	author = {Thornley, J. H. M.},
	month = dec,
	year = {1986},
	pages = {481--492},
}

@incollection{bradford_applying_2022,
	series = {Burleigh {Dodds} {Series} in {Agricultural} {Science}},
	title = {Applying population-based threshold models to quantify and improve seed quality attributes},
	isbn = {978-1-78676-917-6},
	booktitle = {Advances in {Seed} {Science} and {Technology} for {More} {Sustainable} {Crop} {Productio}},
	publisher = {Burleigh Dodds Science Publishing},
	author = {Bradford, Kent J. and Bello, Pedro},
	editor = {Buitink, Julia and Leprince, Olivier},
	month = jul,
	year = {2022},
	pages = {67--154},
}

@article{harrison_brief_2018,
	title = {A brief introduction to mixed effects modelling and multi-model inference in ecology},
	volume = {6},
	language = {en},
	journal = {PeerJ},
	author = {Harrison, Xavier A. and Donaldson, Lynda and Correa-Cano, Maria Eugenia and Evans, Julian and Fisher, David N. and Goodwin, Cecily E.D. and Robinson, Beth S. and Hodgson, David J. and Inger, Richard},
	month = may,
	year = {2018},
	pages = {e4794},
}

@inproceedings{stroup_non-normal_2013,
	address = {Kansas State University},
	title = {Non-normal data in agricultural experiments},
	language = {en},
	booktitle = {Proceedings of the 25th {Conference} on {Applied} {Statistics} in {Agriculture}},
	author = {Stroup, W. W.},
	month = apr,
	year = {2013},
}

@article{naylor_using_2007,
	title = {Using segmented regression to analyse the response of germination to temperature},
	volume = {35},
	number = {3},
	journal = {Seed Science and Technology},
	author = {Naylor, R. E. L.},
	year = {2007},
	pages = {539--549},
}

@article{ellis_influence_1986,
	title = {The influence of temperature on seed germination rate in grain legumes: {II}. intraspecific variation in chickpea ({<}i{>}{Cicer} arietinum{<}i{>} l.) at constant temperatures},
	volume = {37},
	shorttitle = {The influence of temperature on seed germination rate in grain legumes},
	number = {10},
	journal = {Journal of Experimental Botany},
	author = {Ellis, R. H. and Covell, S. and Roberts, E. H. and Summerfield, R. J.},
	month = oct,
	year = {1986},
	pages = {1503--1515},
}

@article{onofri_unified_2022,
	title = {A unified framework for the analysis of germination, emergence, and other time-to-event data in weed science},
	volume = {70},
	language = {en},
	number = {3},
	journal = {Weed Science},
	author = {Onofri, Andrea and Mesgaran, Mohsen B. and Ritz, Christian},
	month = may,
	year = {2022},
	pages = {259--271},
}

@article{liu_hydrothermal_2020,
	title = {Hydrothermal sensitivities of seed populations underlie fluctuations of dormancy states in an annual plant community},
	volume = {101},
	language = {en},
	number = {3},
	journal = {Ecology},
	author = {Liu, Shuangshuang and Bradford, Kent J. and Huang, Zhenying and Venable, D. Lawrence},
	month = mar,
	year = {2020},
}

@article{donohue_applying_2015,
	title = {Applying developmental threshold models to evolutionary ecology},
	volume = {30},
	language = {en},
	number = {2},
	journal = {Trends in Ecology \& Evolution},
	author = {Donohue, Kathleen and Burghardt, Liana T. and Runcie, Daniel and Bradford, Kent J. and Schmitt, Johanna},
	month = feb,
	year = {2015},
	pages = {66--77},
}

@article{hawkins_secondary_2017,
	title = {Secondary dormancy induction and release in \emph{{Bromus} tectorum} seeds: the role of temperature, water potential and hydrothermal time},
	volume = {27},
	shorttitle = {Secondary dormancy induction and release in \emph{{Bromus} tectorum} seeds},
	language = {en},
	number = {1},
	journal = {Seed Science Research},
	author = {Hawkins, K. K. and Allen, P.S. and Meyer, S.E.},
	month = mar,
	year = {2017},
	pages = {12--25},
}

@article{meyer_predicting_2009,
	title = {Predicting seed dormancy loss and germination timing for \emph{{Bromus} tectorum} in a semi-arid environment using hydrothermal time models},
	volume = {19},
	language = {en},
	number = {4},
	journal = {Seed Science Research},
	author = {Meyer, Susan E. and Allen, Phil S.},
	month = dec,
	year = {2009},
	pages = {225--239},
}

@article{bello_single-seed_2016,
	title = {Single-seed oxygen consumption measurements and population-based threshold models link respiration and germination rates under diverse conditions},
	volume = {26},
	language = {en},
	number = {3},
	journal = {Seed Science Research},
	author = {Bello, Pedro and Bradford, Kent J.},
	month = sep,
	year = {2016},
	pages = {199--221},
}

@article{tatari_application_2020,
	title = {Application of the hydrotime model to assess seed priming effects on the germination of rapeseed (\emph{{Brassica} napus} {L}.) in response to water stress},
	volume = {98},
	number = {5},
	journal = {Botany},
	author = {Tatari, Samaneh and Ghaderi-Far, Farshid and Yamchi, Ahad and Siahmarguee, Asieh and Shayanfar, Ali and Baskin, Carol C.},
	month = may,
	year = {2020},
	pages = {283--291},
}

@mastersthesis{bello_analytical_2021,
	title = {Analytical and {Computational} {Tools} to {Assess} {Seed} {Quality} and {Model} {Germination} {Rates}},
	school = {University of California, Davis},
	author = {Bello, Pedro Henrique Nogueira},
	year = {2021},
}

@article{still_using_1998,
	title = {Using hydrotime and {ABA}-time models to quantify seed quality of {Brassicas} during development},
	volume = {123},
	language = {en\_US},
	number = {4},
	journal = {Journal of the American Society for Horticultural Science},
	author = {Still, David W. and Bradford, Kent J.},
	month = jul,
	year = {1998},
	note = {Publisher: American Society for Horticultural Science
Section: Journal of the American Society for Horticultural Science},
	pages = {692--699},
}

@article{dorado_germination_2009,
	title = {Germination patterns in naturally chilled and nonchilled seeds of fierce thornapple ( \emph{{Datura} ferox} ) and velvetleaf ( \emph{{Abutilon} theophrasti} )},
	volume = {57},
	language = {en},
	number = {2},
	journal = {Weed Science},
	author = {Dorado, Jose and Fernandez-Quintanilla, Cesar and Grundy, Andrea C.},
	month = apr,
	year = {2009},
	pages = {155--162},
}

@techreport{chen_new_2022,
	type = {preprint},
	title = {A new framework for modelling seed germination and seedling tillering of winter wheat in the field},
	abstract = {Abstract
          Aims
 Seed germination is regulated by multiple environmental cues in the field and understanding their relationship is critical to planning seed drilling and subsequent seedling management but challenging due to the trade-off impact of some environmental stimuli on metabolic reactions involved in the germination.
Methods
 We develop a new framework by introducing a physiological dimension over which the metabolic reactions associated with seed germination can be modelled as a moving dynamic event. The influence of environmental cues and the heterogeneity of seeds is described by an average germination rate and a dispersion coefficient. Winter wheat seeds were drilled at different dates in field plots under different soil water contents, and the time course of germination in all treatments and the subsequent tillering development are used to validate the model.
Results
 The model accurately reproduces the time course of germination in all treatments. We find that the average germination rate increases asymptotically rather than linearly as the temperature increases within the base-suboptimal temperature range, and that there is an optimal soil water content at which the germination rate peaks due to the trade-off impact of soil water on seed imbibition and soil anaerobicity. The average germination rate and the dispersion coefficient are closely related.
Conclusions
 Using soil water content instead of matric potential in our model can naturally describe the simultaneous impact of soil water on soil anaerobicity and seed imbibition, and the physiological dimension can be extended to combine seed germination and seedling tillering development as a continued physiological process.},
	institution = {In Review},
	author = {Chen, Jinping and Whalley, Peter A. and Li, Zhongyang and Gao, Yang and Zhang, Xiaoxian and Hawkesford, Malcolm J. and Whalley, W. Richard},
	month = apr,
	year = {2022},
}

@article{malavert_role_2020,
	title = {The role of seed water content for the perception of temperature signals that drive dormancy changes in \emph{{Polygonum} aviculare} buried seeds},
	volume = {48},
	language = {en},
	number = {1},
	journal = {Functional Plant Biology},
	author = {Malavert, Cristian and Batlla, Diego and Benech-Arnold, Roberto L. and Malavert, Cristian and Batlla, Diego and Benech-Arnold, Roberto L.},
	month = jul,
	year = {2020},
	pages = {28--39},
}

@article{afzal_quantifying_2022,
	title = {Quantifying the germination response of \emph{{Parthenium} hysterophorus} at various temperatures and water potentials by using population-based threshold model},
	volume = {13},
	journal = {Frontiers in Plant Science},
	author = {Afzal, Irfan and Akram, Muhammad and Javed, Talha and Ali, Faryal and Kalaji, Hazem M. and Wrobel, Jacek and Telesinski, Arkadiusz and Mojski, Jacek and Ahmed, Mohamed AA},
	year = {2022},
}

@article{bradford_understanding_2023,
	title = {Understanding seed behavior: populations of individuals},
	shorttitle = {Understanding seed behavior},
	number = {1365},
	journal = {Acta Horticulturae},
	author = {Bradford, K.J. and Bello, P.},
	month = apr,
	year = {2023},
	pages = {1--16},
}

@article{yasin_effect_2016,
	title = {Effect of reduced oxygen concentration on the germination behavior of vegetable seeds},
	volume = {57},
	language = {en},
	number = {5},
	journal = {Horticulture, Environment, and Biotechnology},
	author = {Yasin, Muhammad and Andreasen, Christian},
	month = oct,
	year = {2016},
	pages = {453--461},
}

@article{wang_quantitative_2009,
	title = {Quantitative description of the effect of stratification on dormancy release of grape seeds in response to various temperatures and water contents},
	volume = {60},
	number = {12},
	journal = {Journal of Experimental Botany},
	author = {Wang, W. Q. and Song, S. Q. and Li, S. H. and Gan, Y. Y. and Wu, J. H. and Cheng, H. Y.},
	month = aug,
	year = {2009},
	pages = {3397--3406},
}

@article{boddy_stratification_2013,
	title = {Stratification requirements for seed dormancy alleviation in a wetland weed},
	volume = {8},
	language = {en},
	number = {9},
	journal = {PLOS ONE},
	author = {Boddy, Louis G. and Bradford, Kent J. and Fischer, Albert J.},
	month = sep,
	year = {2013},
	note = {tex.ids= boddy\_stratification\_2013-1
publisher: Public Library of Science},
	pages = {e71457},
}

@article{batlla_changes_2005,
	title = {Changes in the light sensitivity of buried \emph{{Polygonum} aviculare} seeds in relation to cold-induced dormancy loss: {Development} of a predictive model},
	volume = {165},
	shorttitle = {Changes in the light sensitivity of buried polygonum aviculare seeds in relation to cold-induced dormancy loss},
	number = {2},
	journal = {The New Phytologist},
	author = {Batlla, Diego and Benech-Arnold, Roberto Luis},
	year = {2005},
	pages = {445--452},
}

@article{malavert_light_2021,
	title = {Light sensitivity changes during dormancy induction in \emph{{Polygonum} aviculare} {L}. seeds: development of a predictive model of annual changes in seed-bank light sensitivity in relation to soil temperature},
	volume = {61},
	shorttitle = {Light sensitivity changes during dormancy induction in {Polygonum} aviculare {L}. seeds},
	language = {en},
	number = {2},
	journal = {Weed Research},
	author = {Malavert, Cristian and Batlla, Diego and Benech-Arnold, Roberto L.},
	year = {2021},
	pages = {115--125},
}

@article{fernandez_farnocchia_regulation_2019,
	title = {Regulation of seed dormancy by the maternal environment is instrumental for maximizing plant fitness in \emph{{Polygonum} aviculare}},
	volume = {70},
	number = {18},
	journal = {Journal of Experimental Botany},
	author = {Fernandez Farnocchia, Rocio B and Benech-Arnold, Roberto L and Batlla, Diego},
	month = sep,
	year = {2019},
	pages = {4793--4806},
}

@article{fernandez_farnocchia_optimization_2021,
	title = {Optimization of timing of next-generation emergence in \emph{{Amaranthus} hybridus} is determined via modulation of seed dormancy by the maternal environment},
	volume = {72},
	number = {12},
	journal = {Journal of Experimental Botany},
	author = {Fernandez Farnocchia, Rocio Belen and Benech-Arnold, Roberto Luis and Mantese, Anita and Batlla, Diego},
	month = may,
	year = {2021},
	pages = {4283--4297},
}

@article{seal_seed_2018,
	title = {Seed germination niche of the halophyte \emph{{Suaeda} maritima} to combined salinity and temperature is characterised by a halothermal time model},
	volume = {155},
	language = {en},
	journal = {Environmental and Experimental Botany},
	author = {Seal, Charlotte E. and Barwell, Louise J. and Flowers, Timothy J. and Merrett Wade, Ellie and Pritchard, Hugh W.},
	month = nov,
	year = {2018},
	pages = {177--184},
}

@article{bair_hydrothermal_2006,
	title = {A hydrothermal after-ripening time model for seed dormancy loss in \emph{{Bromus} tectorum} {L}.},
	volume = {16},
	language = {en},
	number = {1},
	journal = {Seed Science Research},
	author = {Bair, Necia B. and Meyer, Susan E. and Allen, Phil S.},
	month = mar,
	year = {2006},
	pages = {17--28},
}

@article{christensen_hydrothermal_1996,
	title = {A hydrothermal time model of seed after-ripening in \emph{{Bromus} tectorum} {L}.},
	volume = {6},
	language = {en},
	number = {4},
	journal = {Seed Science Research},
	author = {Christensen, Maren and Meyer, Susan E. and Allen, Phil S.},
	month = dec,
	year = {1996},
	note = {tex.ids= christensen\_hydrothermal\_1996-1
publisher: Cambridge University Press},
	pages = {155--164},
}

@article{bradford_relationship_1994,
	title = {Relationship between accumulated hydrothermal time during seed priming and subsequent seed germination rates},
	volume = {4},
	language = {en},
	number = {2},
	journal = {Seed Science Research},
	author = {Bradford, Kent J. and Haigh, Anthony M.},
	month = jun,
	year = {1994},
	pages = {63--69},
}

@article{batlla_framework_2015,
	title = {A framework for the interpretation of temperature effects on dormancy and germination in seed populations showing dormancy},
	volume = {25},
	abstract = {Abstract
            Temperature is a key factor affecting both dormancy and germination. In non-dormant seeds, when temperature is within the thermal range permissive for germination, it just regulates germination velocity, while in seeds presenting dormancy it can also be affecting dormancy level, dormancy termination and the expression of dormancy itself. This dual effect of temperature on dormancy and germination often leads to misinterpretation of obtained germination results and confounds the analysis of temperature effects in seed populations presenting some degree of dormancy. In the present paper we discuss the effect of temperature in the regulation of dormancy level and its implications in dormancy expression, as an attempt to construct a conceptual framework that allows distinguishing between the effects of temperature on dormancy and germination. Finally, we present examples of how a better understanding of these effects could help us to interpret the mixed effects of temperature on both processes during incubation of seeds presenting dormancy.},
	language = {en},
	number = {2},
	journal = {Seed Science Research},
	author = {Batlla, Diego and Benech-Arnold, Roberto L.},
	month = jun,
	year = {2015},
	pages = {147--158},
}

@mastersthesis{bair_hydrothermal_2004,
	title = {A hydrothermal after-ripening time model for seed dormancy loss in \emph{{Bromus} tectorum} {L}.},
	language = {en},
	school = {Department of Plant and Animal Science, Brigham Young University},
	author = {Bair, Necia B.},
	month = aug,
	year = {2004},
}

@article{patane_modeling_2016,
	title = {Modeling seed germination of unprimed and primed seeds of sweet sorghum under {PEG}-induced water stress through the hydrotime analysis},
	volume = {38},
	language = {en},
	number = {5},
	journal = {Acta Physiologiae Plantarum},
	author = {Patane, Cristina and Saita, Alessandro and Tubeileh, Ashraf and Cosentino, Salvatore L. and Cavallaro, Valeria},
	month = apr,
	year = {2016},
	pages = {115},
}

@article{dahal_respiration_1996,
	title = {Respiration and germination rates of tomato seeds at suboptimal temperatures and reduced water potentials},
	volume = {47},
	number = {7},
	journal = {Journal of Experimental Botany},
	author = {Dahal, Peetambar and Kim, Nahm-Su and Bradford, Kent J.},
	month = jul,
	year = {1996},
	pages = {941--947},
}

@article{cheng_hydrothermal_1999,
	title = {Hydrothermal time analysis of tomato seed germination responses to priming treatments},
	volume = {50},
	number = {330},
	journal = {Journal of Experimental Botany},
	author = {Cheng, Zhiyuan and Bradford, Kent J.},
	month = jan,
	year = {1999},
	pages = {89--99},
}

@article{bradford_sensitivity_1994,
	title = {Sensitivity thresholds and variable time scales in plant hormone action},
	volume = {105},
	language = {en},
	number = {4},
	journal = {Plant Physiology},
	author = {Bradford, K. J. and Trewavas, A. J.},
	month = aug,
	year = {1994},
	pages = {1029--1036},
}

@article{finch-savage_development_2005,
	title = {Development of combined imbibition and hydrothermal threshold models to simulate maize (\emph{{Zea} mays}) and chickpea (\emph{{Cicer} arietinum}) seed germination in variable environments},
	volume = {165},
	language = {en},
	number = {3},
	journal = {New Phytologist},
	author = {Finch-Savage, W. E. and Rowse, H. R. and Dent, K. C.},
	year = {2005},
	pages = {825--838},
}

@article{durr_ranges_2015,
	title = {Ranges of critical temperature and water potential values for the germination of species worldwide: {Contribution} to a seed trait database},
	volume = {200},
	shorttitle = {Ranges of critical temperature and water potential values for the germination of species worldwide},
	language = {en},
	journal = {Agricultural and Forest Meteorology},
	author = {Durr, C. and Dickie, J.B. and Yang, X.-Y. and Pritchard, H.W.},
	month = jan,
	year = {2015},
	pages = {222--232},
}

@article{batlla_quantitative_2003,
	title = {A quantitative analysis of seed responses to cycle-doses of fluctuating temperatures in relation to dormancy: {Development} of a thermal time model for \emph{{Polygonum} aviculare} {L}. seeds},
	volume = {13},
	shorttitle = {A quantitative analysis of seed responses to cycle-doses of fluctuating temperatures in relation to dormancy},
	language = {en},
	number = {3},
	journal = {Seed Science Research},
	author = {Batlla, Diego and Verges, Virginia and Benech-Arnold, Roberto Luis},
	month = sep,
	year = {2003},
	pages = {197--207},
}

@article{grundy_modelling_2000,
	title = {Modelling the germination of \emph{{Stellaria} media} using the concept of hydrothermal time},
	volume = {148},
	language = {en},
	number = {3},
	journal = {New Phytologist},
	author = {Grundy, A. C. and Phelps, K. and Reader, R. J. and Burston, S.},
	month = dec,
	year = {2000},
	pages = {433--444},
}

@article{bakhshandeh_new_2020,
	title = {A new halothermal time model describes seed germination responses to salinity across both sub- and supra-optimal temperatures},
	volume = {42},
	language = {en},
	number = {8},
	journal = {Acta Physiologiae Plantarum},
	author = {Bakhshandeh, Esmaeil and Bradford, Kent J. and Pirdashti, Hemmatollah and Vahabinia, Fatemeh and Abdellaoui, Raoudha},
	month = aug,
	year = {2020},
	pages = {137},
}

@article{watt_key_2012,
	title = {Key features of the seed germination response to high temperatures},
	volume = {196},
	language = {en},
	number = {2},
	journal = {New Phytologist},
	author = {Watt, Michael S. and Bloomberg, Mark},
	month = oct,
	year = {2012},
	pages = {332--336},
}

@article{bierhuizen_aspects_1974,
	title = {Some aspects of seed germination in vegetables. 1. {The} determination and application of heat sums and minimum temperature for germination},
	volume = {2},
	language = {en},
	number = {3},
	journal = {Scientia Horticulturae},
	author = {Bierhuizen, J. F. and Wagenvoort, W. A.},
	month = sep,
	year = {1974},
	pages = {213--219},
}

@book{stroup_generalized_2016,
	edition = {1st},
	title = {Generalized {Linear} {Mixed} {Models}: {Modern} {Concepts}, {Methods} and {Applications}},
	isbn = {978-1-4398-1513-7},
	shorttitle = {Generalized {Linear} {Mixed} {Models}},
	language = {eng},
	publisher = {CRC Press},
	author = {Stroup, Walter W.},
	year = {2016},
}

@misc{chau_gslnls_2023,
	title = {gslnls: {GSL} {Nonlinear} {Least}-{Squares} {Fitting}},
	copyright = {GPL-3},
	shorttitle = {gslnls},
	author = {Chau, Joris},
	month = jan,
	year = {2023},
}

@book{galassi_gnu_2009,
	address = {Bristol},
	edition = {3. ed},
	title = {{GNU} {Scientific} {Library} {Reference} {Manual}: {For} {GSL} {Version} 1.12},
	isbn = {978-0-9546120-7-8},
	shorttitle = {Gnu {Scientific} {Library} {Reference} {Manual}},
	language = {eng},
	publisher = {Network Theory},
	editor = {Galassi, Mark},
	year = {2009},
}

@article{wood_priming_2010,
	title = {Priming increases the storability and changes the water sorption properties of \emph{{Rhododendron} griersonianum} seeds},
	volume = {38},
	number = {3},
	journal = {Seed Science and Technology},
	author = {Wood, I.P. and Hay, F.R.},
	month = oct,
	year = {2010},
	pages = {682--691},
}

@article{carvalho_why_2018,
	title = {Why analyze germination experiments using {Generalized} {Linear} {Models}?},
	volume = {40},
	abstract = {Abstract: We compared the goodness of fit and efficiency of models for germination. Generalized Linear Models (GLMs) were performed with a randomized component corresponding to the percentage of germination for a normal distribution or to the number of germinated seeds for a binomial distribution. Lower levels of Akaikes's Information Criterion (AIC) and Bayesian Information Criterion (BIC) combined, data adherence to simulated envelopes of normal plots and corrected confidence intervals for the means guaranteed the binomial model a better fit, justifying the importance of GLMs with binomial distribution. Some authors criticize the inappropriate use of analysis of variance (ANOVA) for discrete data such as copaiba oil, but we noted that all model assumptions were met, even though the species had dormant seeds with irregular germination.
          , 
            Resumo: A qualidade do ajuste e eficiencia de modelos de germinacao foram comparadas. Modelos Lineares Generalizados (MLGs) foram executados com o componente aleatorio correspondendo ao percentual de germinacao para a distribuicao normal e o numero de sementes germinadas para a distribuicao binomial. Baixos valores do Criterio de Informacao de Akaike (AIC) e do Criterio de Informacao Bayesiano (BIC), ajuste aos envelopes simulados dos Normal plots e intervalos de confianca corretos para as medias justificam a importancia do uso dos MLGs com distribuicao binomial. Alguns autores criticam o uso inapropriado da analise de variancia (ANOVA) para dados discretos como a germinacao de copaiba, mas todas as pressuposicoes do modelo foram atendidas, mesmo a especie possuindo sementes dormentes e germinacao irregular.},
	number = {3},
	journal = {Journal of Seed Science},
	author = {Carvalho, Fabio Janoni and Santana, Denise Garcia De and Araujo, Lucio Borges De},
	month = sep,
	year = {2018},
	pages = {281--287},
}

@article{humplik_Bayesian_2020,
	title = {Bayesian approach for analysis of time-to-event data in plant biology},
	volume = {16},
	abstract = {Abstract
            
              Background
              Plants, like all living organisms, metamorphose their bodies during their lifetime. All the developmental and growth events in a plant's life are connected to specific points in time, be it seed germination, seedling emergence, the appearance of the first leaf, heading, flowering, fruit ripening, wilting, or death. The onset of automated phenotyping methods has brought an explosion of such time-to-event data. Unfortunately, it has not been matched by an explosion of adequate data analysis methods.
            
            
              Results and discussion
              In this paper, we introduce the Bayesian approach towards time-to-event data in plant biology. As a model example, we use seedling emergence data of maize under control and stress conditions but the Bayesian approach is suitable for any time-to-event data (see the examples above). In the proposed framework, we are able to answer key questions regarding plant emergence such as these: (1) Do seedlings treated with compound A emerge earlier than the control seedlings? (2) What is the probability of compound A increasing seedling emergence by at least 5 percent?
            
            
              Conclusion
              Proper data analysis is a fundamental task of general interest in life sciences. Here, we present a novel method for the analysis of time-to-event data which is applicable to many plant developmental parameters measured in field or in laboratory conditions. In contrast to recent and classical approaches, our Bayesian computational method properly handles uncertainty in time-to-event data and it is capable to reliably answer questions that are difficult to address by classical methods.},
	language = {en},
	number = {1},
	journal = {Plant Methods},
	author = {Humplik, Jan F. and Dostal, Jakub and Ugena, Lydia and Spichal, Lukas and De Diego, Nuria and Vencalek, Ondrej and Furst, Tomas},
	month = dec,
	year = {2020},
	pages = {14},
}

@article{gholamhoseini_sesame_2024,
	title = {Sesame {Germination} {Dynamics}: {Unravelling} {Sesame}'s {Response} to {Salinity} and {Temperature} {Variability}},
	volume = {3},
	copyright = {http://creativecommons.org/licenses/by/3.0/},
	shorttitle = {Sesame {Germination} {Dynamics}},
	language = {en},
	number = {1},
	journal = {Seeds},
	author = {Gholamhoseini, Majid and Dolatabadian, Aria},
	month = mar,
	year = {2024},
	note = {Number: 1
Publisher: Multidisciplinary Digital Publishing Institute},
	pages = {76--87},
}
