R: Genetics Input/Output Functions

# Genetics Input/Output Functions

## Documentation for package ‘genio’ version 1.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

genio-package | genio (GENetics I/O): A package for reading and writing genetics data
count_lines | Count the number of lines of a file
delete_files_grm | Delete all GCTA binary GRM files
delete_files_phen | Delete PHEN files
delete_files_plink | Delete all Plink binary files
genio | genio (GENetics I/O): A package for reading and writing genetics data
geno_to_char | Convert a genotype matrix from numeric to character codes
ind_to_fam | Convert an Eigenstrat IND tibble into a Plink FAM tibble
make_bim | Create a Plink BIM tibble
make_fam | Create a Plink FAM tibble
read_bed | Read a genotype matrix in Plink BED format
read_bim | Read Plink *.bim files
read_eigenvec | Read Plink eigenvec file
read_fam | Read Plink *.fam files
read_grm | Read GCTA GRM and related plink2 binary files
read_ind | Read Eigenstrat *.ind files
read_matrix | Read a numerical matrix file into an R matrix
read_phen | Read *.phen files
read_plink | Read genotype and sample data in a Plink BED/BIM/FAM file set.
read_snp | Read Eigenstrat *.snp files
require_files_grm | Require that GCTA binary GRM files are present
require_files_phen | Require that PHEN file is present
require_files_plink | Require that Plink binary files are present
sex_to_char | Convert integer sex codes to character codes
sex_to_int | Convert character sex codes to integer codes
tidy_kinship | Create a tidy version of a kinship matrix
write_bed | Write a genotype matrix into Plink BED format
write_bim | Write Plink *.bim files
write_eigenvec | Write eigenvectors table into a Plink-format file
write_fam | Write Plink *.fam files
write_grm | Write GCTA GRM and related plink2 binary files
write_ind | Write Eigenstrat *.ind files
write_matrix | Write a matrix to a file without row or column names
write_phen | Write *.phen files
write_plink | Write genotype and sample data into a Plink BED/BIM/FAM file set.
write_snp | Write Eigenstrat *.snp files