R: Get Gene Sets for Gene Enrichment Analysis

# Get Gene Sets for Gene Enrichment Analysis

## Documentation for package ‘geneset’ version 0.2.7

- DESCRIPTION file
- Package README

## Help Pages

Datasets | Datasets go_org contains GO species information
enrichr_metadata | Datasets go_org contains GO species information
ensOrg_name | Datasets go_org contains GO species information
getEnrichrdb | Get EnrichrDB geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id
getGO | Get GO geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
getHgDisease | Get HgDisease geneset and geneset_name Human disease gene sets from Disease Ontology (DO),DisGeNET, Network of Cancer Gene (NCG) version 6 and v7, and covid19-specific. Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
getKEGG | Get KEGG geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
getMesh | Get MeSH geneset and geneset_name MeSH is the annotation used for MEDLINE/PubMed articles and is manually curated by NLM (U.S. National Library of Medicine). Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
getMsigdb | Get MsigDb geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id
getReactome | Get Reactome geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
getWiki | Get WikiPathway geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
go_org | Datasets go_org contains GO species information
kegg_org | Datasets go_org contains GO species information
mesh_metadata | Datasets go_org contains GO species information
mesh_org | Datasets go_org contains GO species information
msigdb_org | Datasets go_org contains GO species information
org2cate | Datasets go_org contains GO species information
reactome_org | Datasets go_org contains GO species information
wiki_org | Datasets go_org contains GO species information