Package: geneHummus
Title: A Pipeline to Define Gene Families in Legumes and Beyond
Version: 1.0.11
Authors@R: c(
  person("Jose V.", "Die", email = "jose.die@uco.es", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7506-8590")), 
  person("Moamen M.", "Elmassry", email = "moamen.elmassry@ttu.edu", role = c("ctb")),
  person("Kimberly H.", "LeBlanc", email = "kimberly.leblanc@nih.gov", role = c("ctb")),
  person("Olaitan I.", "Awe", email = "laitanawe@gmail.com", role = c("ctb")),
  person("Allissa","Dillman", email = "Allissa.Dillman@nih.gov", role = c("ctb")), 
  person("Ben", "Busby", email = "Ben.Busby@nih.gov", role = c("aut")))
Description: A pipeline with high specificity and sensitivity in extracting 
  proteins from the RefSeq database (National Center for Biotechnology 
  Information). Manual identification of gene families is highly 
  time-consuming and laborious, requiring an iterative process of manual and 
  computational analysis to identify members of a given family. The pipelines 
  implements an automatic approach for the identification of gene families 
  based on the conserved domains that specifically define that family. See 
  Die et al. (2018) <doi:10.1101/436659> for more information and examples.
Depends: R (>= 3.4.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: rentrez (>= 1.2.1), stringr (>= 1.4.0), dplyr (>= 0.8.0.1),
        httr (>= 1.4.0), utils, curl (>= 3.3)
Suggests: knitr, rmarkdown
URL: https://github.com/NCBI-Hackathons/GeneHummus
BugReports: https://github.com/NCBI-Hackathons/GeneHummus/issues
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-04-04 22:19:22 UTC; josedie
Author: Jose V. Die [aut, cre] (<https://orcid.org/0000-0002-7506-8590>),
  Moamen M. Elmassry [ctb],
  Kimberly H. LeBlanc [ctb],
  Olaitan I. Awe [ctb],
  Allissa Dillman [ctb],
  Ben Busby [aut]
Maintainer: Jose V. Die <jose.die@uco.es>
Repository: CRAN
Date/Publication: 2019-04-04 22:30:03 UTC
Built: R 4.6.0; ; 2026-04-29 03:02:10 UTC; unix
