R: Globally-Applicable Area Disaggregated General Ecosystem Toolbox V3

# Globally-Applicable Area Disaggregated General Ecosystem Toolbox V3

## Documentation for package ‘gadget3’ version 0.15-1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A B D G L N P R S

## -- A --

ADREPORT | Gadget3 global environment
as.numeric | Gadget3 global environment
assert_msg | Gadget3 global environment
as_integer | Gadget3 global environment
avoid_zero | Gadget3 global environment
avoid_zero_vec | Gadget3 global environment

## -- B --

bounded | Gadget3 global environment
bounded_vec | Gadget3 global environment

## -- D --

debug_label | G3 stock_* transformation functions
debug_trace | G3 stock_* transformation functions
dif_pmax | g3 env: differentiable functions
dif_pmin | g3 env: differentiable functions
dif_pminmax | g3 env: differentiable functions

## -- G --

g3a_age | Gadget3 age action
g3a_growmature | Gadget3 growth action
g3a_grow_impl_bbinom | Gadget3 growth action
g3a_grow_lengthvbsimple | Gadget3 growth action
g3a_grow_length_multspec | Gadget3 growth action
g3a_grow_length_weightjones | Gadget3 growth action
g3a_grow_weightsimple | Gadget3 growth action
g3a_grow_weight_multspec | Gadget3 growth action
g3a_grow_weight_weightjones | Gadget3 growth action
g3a_initialconditions_normalcv | Gadget3 renewal actions
g3a_initialconditions_normalparam | Gadget3 renewal actions
g3a_mature | Gadget3 maturity action
g3a_mature_constant | Gadget3 maturity action
g3a_mature_continuous | Gadget3 maturity action
g3a_migrate | Gadget3 migration action
g3a_migrate_normalize | Gadget3 migration action
g3a_naturalmortality | Gadget3 natural mortality action
g3a_naturalmortality_exp | Gadget3 natural mortality action
g3a_otherfood | Gadget3 renewal actions
g3a_otherfood_normalcv | Gadget3 renewal actions
g3a_otherfood_normalparam | Gadget3 renewal actions
g3a_predate | Gadget3 predation actions
g3a_predate_catchability_effortfleet | Gadget3 predation actions
g3a_predate_catchability_linearfleet | Gadget3 predation actions
g3a_predate_catchability_numberfleet | Gadget3 predation actions
g3a_predate_catchability_predator | Gadget3 predation actions
g3a_predate_catchability_project | Gadget3 predation actions
g3a_predate_catchability_quotafleet | Gadget3 predation actions
g3a_predate_catchability_totalfleet | Gadget3 predation actions
g3a_predate_fleet | Gadget3 predation actions
g3a_predate_maxconsumption | Gadget3 predation actions
g3a_predate_tagrelease | Gadget3 tag-release action
g3a_predate_totalfleet | Gadget3 predation actions
g3a_renewal_initabund | Gadget3 renewal actions
g3a_renewal_normalcv | Gadget3 renewal actions
g3a_renewal_normalparam | Gadget3 renewal actions
g3a_renewal_vonb | Gadget3 renewal actions
g3a_renewal_vonb_recl | Gadget3 renewal actions
g3a_renewal_vonb_t0 | Gadget3 renewal actions
g3a_report_detail | Gadget3 report actions
g3a_report_history | Gadget3 report actions
g3a_report_stock | Gadget3 report actions
g3a_spawn | Gadget3 spawning action
g3a_spawn_recruitment_bevertonholt | Gadget3 spawning action
g3a_spawn_recruitment_bevertonholt_ss3 | Gadget3 spawning action
g3a_spawn_recruitment_fecundity | Gadget3 spawning action
g3a_spawn_recruitment_hockeystick | Gadget3 spawning action
g3a_spawn_recruitment_ricker | Gadget3 spawning action
g3a_spawn_recruitment_simplessb | Gadget3 spawning action
g3a_spmodel | Gadget3 surplus production model
g3a_spmodel_logistic | Gadget3 surplus production model
g3a_tag_shedding | Gadget3 tag-release action
g3a_time | Gadget3 timekeeping actions
g3a_trace_timings | Tracing and debugging tools
g3a_trace_var | Tracing and debugging tools
g3a_weightloss | Gadget3 weightloss action
g3l_abundancedistribution | Gadget3 likelihood actions
g3l_bounds_penalty | Gadget3 likelihood bounds_penalty action
g3l_catchdistribution | Gadget3 likelihood actions
g3l_distribution_multinomial | Gadget3 likelihood actions
g3l_distribution_multivariate | Gadget3 likelihood actions
g3l_distribution_sumofsquaredlogratios | Gadget3 likelihood actions
g3l_distribution_sumofsquares | Gadget3 likelihood actions
g3l_distribution_surveyindices_linear | Gadget3 likelihood actions
g3l_distribution_surveyindices_log | Gadget3 likelihood actions
g3l_random_dnorm | Gadget3 random effects likelihood actions
g3l_random_walk | Gadget3 random effects likelihood actions
g3l_sparsesample | Gadget3 likelihood actions for sparse data
g3l_sparsesample_linreg | Gadget3 likelihood actions for sparse data
g3l_sparsesample_sumsquares | Gadget3 likelihood actions for sparse data
g3l_tagging_ckmr | Gadget3 CKMR likelihood
g3l_understocking | Gadget3 likelihood understocking action
g3s_age | Gadget3 stock age dimensions
g3s_agegroup | Gadget3 stock age dimensions
g3s_areagroup | Gadget3 stock area dimensions
g3s_clone | Gadget3 stock storage
g3s_livesonareas | Gadget3 stock area dimensions
g3s_tag | Gadget3 tag dimension
g3s_time | Gadget3 stock time dimensions
g3s_time_convert | Gadget3 stock time dimensions
g3_action_order | Standard gadget3 order of actions
g3_areas | Gadget3 stock area dimensions
g3_array_agg | Gadget3 array-handling utilities
g3_array_combine | Gadget3 array-handling utilities
g3_array_plot | Gadget3 array-handling utilities
g3_distribution_preview | Gadget3 likelihood actions
g3_env | Gadget3 global environment
g3_eval | Evaluate G3 forumulas
g3_fleet | Gadget3 stock storage
g3_formula | Gadget3 formula helpers
g3_global_formula | Gadget3 language utilities
g3_idx | G3 language extensions to R
g3_init_val | Gadget3 parameter value setter
g3_is_stock | Gadget3 stock storage
g3_matrix_vec | Gadget3 global environment
g3_native | Gadget3 language utilities
g3_param | G3 language extensions to R
g3_parameterized | Gadget3 parameter helpers
g3_param_project | Gadget3 projected parameters
g3_param_project_ar1 | Gadget3 projected parameters
g3_param_project_dlnorm | Gadget3 projected parameters
g3_param_project_dnorm | Gadget3 projected parameters
g3_param_project_logar1 | Gadget3 projected parameters
g3_param_project_rwalk | Gadget3 projected parameters
g3_param_table | G3 language extensions to R
g3_param_vector | G3 language extensions to R
g3_quota | Gadget3 projected quotas
g3_quota_assess | Gadget3 projected quotas
g3_quota_hockeyfleet | Gadget3 projected quotas
g3_quota_hockeystick | Gadget3 projected quotas
g3_step | G3 stock_* transformation functions
g3_stock | Gadget3 stock storage
g3_stock_def | Gadget3 stock storage
g3_stock_instance | Gadget3 stock storage
g3_suitability_* | Gadget3 suitability formulae
g3_suitability_andersen | Gadget3 suitability formulae
g3_suitability_andersenfleet | Gadget3 suitability formulae
g3_suitability_constant | Gadget3 suitability formulae
g3_suitability_exponential | Gadget3 suitability formulae
g3_suitability_exponentiall50 | Gadget3 suitability formulae
g3_suitability_gamma | Gadget3 suitability formulae
g3_suitability_richards | Gadget3 suitability formulae
g3_suitability_straightline | Gadget3 suitability formulae
g3_timeareadata | Gadget3 time-based data
g3_timevariable | Gadget3 time-based formulas
g3_tmb_adfun | Gadget3 actions into TMB code
g3_tmb_fn | Gadget3 actions into TMB code
g3_tmb_lower | Gadget3 actions into TMB code
g3_tmb_par | Gadget3 actions into TMB code
g3_tmb_parscale | Gadget3 actions into TMB code
g3_tmb_relist | Gadget3 actions into TMB code
g3_tmb_upper | Gadget3 actions into TMB code
g3_to_desc | Gadget3 actions into R code
g3_to_r | Gadget3 actions into R code
g3_to_tmb | Gadget3 actions into TMB code
g3_with | G3 language extensions to R

## -- L --

lgamma_vec | Gadget3 global environment
logspace_add | Gadget3 global environment

## -- N --

nonconform_add | Gadget3 global environment
nonconform_div | Gadget3 global environment
nonconform_divavz | Gadget3 global environment
nonconform_mult | Gadget3 global environment
normalize_vec | Gadget3 global environment
nvl | Gadget3 global environment

## -- P --

print.g3_r | Gadget3 actions into R code
print_array | Gadget3 global environment

## -- R --

ratio_add_pop | Gadget3 global environment
REPORT | Gadget3 global environment
REprintf | Gadget3 global environment
Rprintf | Gadget3 global environment

## -- S --

stock_assert | G3 stock_* transformation functions
stock_interact | G3 stock_* transformation functions
stock_intersect | G3 stock_* transformation functions
stock_iterate | G3 stock_* transformation functions
stock_prepend | G3 stock_* transformation functions
stock_ss | G3 stock_* transformation functions
stock_ssinv | G3 stock_* transformation functions
stock_switch | G3 stock_* transformation functions
stock_with | G3 stock_* transformation functions