R: Fuzzy Similarity in Species Distributions

# Fuzzy Similarity in Species Distributions

## Documentation for package ‘fuzzySim’ version 4.54

- DESCRIPTION file
- Package NEWS

## Help Pages

fuzzySim-package | Fuzzy Similarity in Species Distributions
appendData | Append data
biasLayer | Compute a bias layer
bioThreat | Biotic threat of a stronger over a weaker species based on their favourability values
cleanCoords | Clean coordinates
corSelect | Select among correlated variables based on a given criterion
distMat | Distance matrix for spatial coordinates
distPres | (Inverse) distance to the nearest presence
dms2dec | Degree-minute-second to decimal degree coordinates
entropy | (Fuzzy) entropy
Fav | Favourability (probability without the effect of sample prevalence)
favClass | Classify favourability into 3 categories (low, intermediate, high)
FDR | False Discovery Rate
fuzSim | Fuzzy similarity
fuzzyConsensus | Fuzzy consensus among model predictions
fuzzyOverlay | Overlay operations based on fuzzy logic
fuzzyRangeChange | Range change based on continuous (fuzzy) values
fuzzySim | Fuzzy Similarity in Species Distributions
getPreds | Get model predictions
getRegion | Get region
gridRecords | Grid (or thin) point occurrence records to the resolution of a raster map
integerCols | Classify integer columns
modelTrim | Trim off non-significant variables from a model
modOverlap | Overall overlap between model predictions
multConvert | Multiple conversion
multGLM | GLMs with variable selection for multiple species
multicol | Analyse multicollinearity in a dataset, including VIF
multTSA | Trend Surface Analysis for multiple species
pairwiseRangemaps | Pairwise intersection (and union) of range maps
partialResp | Partial response plot(s) for probability or favourability
percentTestData | Percent test data
prevalence | Prevalence
rangemapSim | Pairwise similarity between rangemaps
rarity | (Fuzzy) rarity
rotif.env | Rotifers and environmental variables on TDWG level 4 regions of the world
rotifers | Rotifer species on TDWG level 4 regions of the world
selectAbsences | Select (spatially biased) absence rows.
sharedFav | Shared favourability for two competing species
simFromSetOps | Calculate similarity from set operations
simMat | Pair-wise (fuzzy) similarity matrix
spCodes | Obtain unique abbreviations of species names
splist2presabs | Convert a species list to a presence-absence table
stepByStep | Compare model predictions along a stepwise variable selection process
stepwise | Stepwise regression
summaryWald | Model summary with Wald (instead of z) test statistics
timer | Timer
transpose | Transpose (part of) a matrix or dataframe
triMatInd | Triangular matrix indices
vulnerability | (Fuzzy) vulnerability