R: Interpretation of Forensic DNA Mixtures

# Interpretation of Forensic DNA Mixtures

## Documentation for package ‘forensim’ version 4.3.3

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

forensim-package | The forensim package
$-method | Accessors for forensim objects
$<--method | Accessors for forensim objects
A2.simu | A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights or areas information when two alleles are observed at a given locus
A3.simu | A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights or areas when three alleles are observed at a given locus
A4.simu | A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights or areas when four alleles are observed at a given locus
as.simugeno | simugeno constructor
as.simumix | simumix constructor
as.tabfreq | tabfreq constructor
changepop | Function to change population-related information in forensim objects
characterOrNULL-class | Virtual classes for forensim
Cmn | The number of all possible combinations of m elements among n with repetitions
comb | Generate all possible combinations of m elements among n with repetitions
dataL | Generic formula of the likelihood of the observed alleles in a mixture conditional on the number of contributors for a specific locus
factorOrNULL-class | Virtual classes for forensim
findfreq | Finds the allele frequencies of a mixture from a tabfreq object
findmax | Function to find the maximum of a vector and its position
forensim | The forensim package
Hbsimu | A Tcl/Tk simulator of the heterozygous balance
is.simugeno | simugeno constructor
is.simumix | simumix constructor
is.tabfreq | tabfreq constructor
lik | Likelihood of the observed alleles at different loci in a DNA mixture conditional on the number of contributors to the mixture
lik.loc | Likelihood per locus of the observed alleles in a DNA mixture conditional on the number of contributors to the mixture
likestim | Maximum likelihood estimation of the number of contributors to a forensic DNA mixture for a set of loci
likestim.loc | Maximum likelihood estimation per locus of the number of contributors to forensic DNA mixtures.
likEvid | Likelihood of DNA evidence conditioned on a given hypothesis
listOrdataframe-class | Virtual classes for forensim
LR | Likelihood ratio for DNA evidence interpretation (2): a sophistacted version of function LR()
LRmixTK | GUI for the LR function
mastermix | A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights/ or areas information
matrixOrdataframe-class | Virtual classes for forensim
mincontri | Minimum number of contributors required to explain a forensic DNA mixture
N2error | Calculates exact error for maximum allele count for two markers
N2Exact | Calculates exact allele distribution for 2 contributors
names-method | forensim class for simluated genotypes
names-method | forensim class for DNA mixtures
names-method | forensim class for population allele frequencies
naomitab | Handling of missing values in a data frame
nball | Number of alleles in a mixture
ngm | Allele frequencies for the new generation markers NGM, for the Caucasian US population
PE | The random man exclusion probability
print-method | forensim class for simluated genotypes
print-method | forensim class for DNA mixtures
print-method | forensim class for population allele frequencies
PV | Predictive value of the maximum likelihood estimator of the number of contributors to a DNA mixture
sgmNorway | Allele frequencies for the new generation markers sgm, for the Norwegian population
show-method | forensim class for simluated genotypes
show-method | forensim class for DNA mixtures
show-method | forensim class for population allele frequencies
simMixSNP | Simulates SNP mixtures
simPCR2 | Polymorphism chain reaction simulation model
simPCR2TK | A Tcl/Tk graphical interface for the polymorphism chain reaction simulation model
simufreqD | Function to simulate allele frequencies for independent loci from a Dirichlet model
simugeno | simugeno constructor
simugeno-class | forensim class for simluated genotypes
simugeno-methods | simugeno constructor
simumix | simumix constructor
simumix-class | forensim class for DNA mixtures
simumix-methods | simumix constructor
simupopD | Simulate multi-population allele frequencies for independent loci from a reference population, following a Dirichlet model
strusa | Allele frequencies for 15 autosomal short tandem repeats core loci on U.S. Caucasian, African American, and Hispanic populations.
strveneto | Population study of three miniSTR loci in Veneto (Italy)
tabfreq | tabfreq constructor
tabfreq-class | forensim class for population allele frequencies
tabfreq-methods | tabfreq constructor
Tu | Allele frequencies of 15 autosomal short tandem repeats loci on Chinese Tu ethnic minority group
vectorOrdataframe-class | Virtual classes for forensim
vectorOrNULL-class | Virtual classes for forensim
wrapdataL | ML estimate of number of contributors for SNPs