R: Analysis of Chlorophyll a Fluorescence Transient Parameters

# Analysis of Chlorophyll a Fluorescence Transient Parameters

## Documentation for package ‘fluorojip’ version 0.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

calc_fluorojip | Compute chlorophyll a fluorescence OJIP / JIP-test parameters
calc_fluorojip_file | Read a summary table and compute FluorOJIP parameters
calc_fluorojip_fluorpen | Calculate FluorOJIP parameters from a FluorPen workbook
calc_fluorojip_handypea | Calculate FluorOJIP parameters from a supported exported table
example_fluorojip | Example OJIP summary data
fluorojip_example_biolyzer_file | Get the bundled Biolyzer validation workbook path
fluorpen_to_ojip | Convert FluorPen traces to an OJIP summary table
handypea_to_ojip | Convert a supported CSV trace export to an OJIP summary table
normalized_jiptable | Build a normalized JIP parameter table
plot_3d_fluorojip | Plot a 3D scatter plot of OJIP parameters
plot_heatmap_fluorojip | Plot a heatmap of OJIP parameters
plot_param_3d | Plot a 3D scatter plot of OJIP parameters
plot_param_heatmap | Plot a heatmap of OJIP parameters
plot_param_surface3d | Plot a 3D scatter plot of OJIP parameters
read_fluorpen_xlsx | Read a FluorPen Excel export
read_handypea_csv | Read a supported Biolyzer-exported CSV trace table
run_fluorojip_app | Run the fluorojip Shiny application
write_normalized_jiptable | Write a normalized JIP parameter table