R: Two-Locus Family-Based Association Test with Polytomous Outcome

# Two-Locus Family-Based Association Test with Polytomous Outcome

## Documentation for package ‘fat2Lpoly’ version 1.2.6

- DESCRIPTION file

## Help Pages

design.1locus | Setting-up design matrices for a polytomous model with a single biallelic marker.
design.dichotomous | Setting-up the design matrix for a logistic model with two biallelic markers.
design.endo2disease | Setting-up design matrices for the endophenotype-to-disease model.
design.full | Setting-up design matrices for a full polytomous model with two biallelic markers.
fat2Lpoly | Two-locus Family-based Association Test with Polytomous Outcome
fat2Lpoly.allSNPs | Example results output by the function 'fat2Lpoly.withinR'
fat2Lpoly.withinR | Two-locus Family-based Association Test with Polytomous Outcome (all arguments within R)
get.scores.pvalues | function to compute scores and p-values
ped.x.all | Example dataset returned by the function 'read.merlin.files'
read.merlin.files | function to read input files in Merlin format