# Generated by roxygen2: do not edit by hand

S3method(CalcR2CvCorrected,default)
S3method(CalcR2CvCorrected,lm)
S3method(DeltaZCorr,default)
S3method(DeltaZCorr,list)
S3method(EigenTensorDecomposition,default)
S3method(EigenTensorDecomposition,list)
S3method(KrzCor,default)
S3method(KrzCor,list)
S3method(KrzCor,mcmc_sample)
S3method(KrzProjection,default)
S3method(KrzProjection,list)
S3method(MantelCor,default)
S3method(MantelCor,list)
S3method(MantelCor,mcmc_sample)
S3method(MantelModTest,default)
S3method(MantelModTest,list)
S3method(MatrixCor,default)
S3method(MatrixCor,list)
S3method(MatrixCor,mcmc_sample)
S3method(MatrixDistance,default)
S3method(MatrixDistance,list)
S3method(PCAsimilarity,default)
S3method(PCAsimilarity,list)
S3method(PCAsimilarity,mcmc_sample)
S3method(PrintMatrix,default)
S3method(PrintMatrix,list)
S3method(RandomSkewers,default)
S3method(RandomSkewers,list)
S3method(RandomSkewers,mcmc_sample)
S3method(SRD,default)
S3method(SRD,list)
S3method(plot,SRD)
S3method(print,mcmc_sample)
export(AlphaRep)
export(Autonomy)
export(BayesianCalculateMatrix)
export(BootstrapR2)
export(BootstrapRep)
export(BootstrapStat)
export(CalcAVG)
export(CalcEigenVar)
export(CalcICV)
export(CalcR2)
export(CalcR2CvCorrected)
export(CalcRepeatability)
export(CalculateMatrix)
export(Center2MeanJacobianFast)
export(ConditionalEvolvability)
export(Constraints)
export(CreateHypotMatrix)
export(DeltaZCorr)
export(DriftTest)
export(EigenTensorDecomposition)
export(Evolvability)
export(ExtendMatrix)
export(Flexibility)
export(JackKnifeMINT)
export(JacobianArray)
export(KrzCor)
export(KrzProjection)
export(KrzSubspace)
export(KrzSubspaceBootstrap)
export(KrzSubspaceDataFrame)
export(LModularity)
export(LocalShapeVariables)
export(MINT)
export(MantelCor)
export(MantelModTest)
export(MatrixCompare)
export(MatrixCor)
export(MatrixDistance)
export(MeanMatrix)
export(MeanMatrixStatistics)
export(MonteCarloR2)
export(MonteCarloRep)
export(MonteCarloStat)
export(MultiMahalanobis)
export(MultivDriftTest)
export(Norm)
export(Normalize)
export(OverlapDist)
export(PCAsimilarity)
export(PCScoreCorrelation)
export(Partition2HypotMatrix)
export(Pc1Percent)
export(PhyloCompare)
export(PhyloMantel)
export(PhyloW)
export(PlotKrzSubspace)
export(PlotRSprojection)
export(PlotRarefaction)
export(PlotTreeDriftTest)
export(PrintMatrix)
export(ProjectMatrix)
export(RSProjection)
export(RandomMatrix)
export(RandomSkewers)
export(Rarefaction)
export(RarefactionStat)
export(RelativeEigenanalysis)
export(RemoveSize)
export(Respondability)
export(RevertMatrix)
export(RiemannDist)
export(Rotate2MidlineMatrix)
export(SRD)
export(TPS)
export(TestModularity)
export(TreeDriftTest)
import(plyr)
importFrom(MCMCpack,riwish)
importFrom(Matrix,Matrix)
importFrom(Matrix,Schur)
importFrom(Matrix,bdiag)
importFrom(Matrix,chol)
importFrom(Matrix,diag)
importFrom(Matrix,nearPD)
importFrom(Matrix,solve)
importFrom(Morpho,ProcGPA)
importFrom(Morpho,arrMean3)
importFrom(Morpho,cSize)
importFrom(ape,cophenetic.phylo)
importFrom(ape,nodelabels)
importFrom(ape,reorder.phylo)
importFrom(coda,HPDinterval)
importFrom(coda,as.mcmc)
importFrom(expm,expm)
importFrom(expm,logm)
importFrom(expm,sqrtm)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_pointrange)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,layer)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,layout)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,text)
importFrom(igraph,graph.adjacency)
importFrom(igraph,optimal.community)
importFrom(methods,is)
importFrom(mvtnorm,dmvnorm)
importFrom(mvtnorm,rmvnorm)
importFrom(numDeriv,jacobian)
importFrom(plyr,aaply)
importFrom(plyr,alply)
importFrom(plyr,laply)
importFrom(reshape2,acast)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,anova)
importFrom(stats,as.formula)
importFrom(stats,confint)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,cov)
importFrom(stats,cov2cor)
importFrom(stats,lm)
importFrom(stats,mahalanobis)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,princomp)
importFrom(stats,quantile)
importFrom(stats,rbeta)
importFrom(stats,reorder)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,spline)
importFrom(stats,var)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(vegan,mantel)
useDynLib(evolqg)
