Rdcm.inventory          Inventory of 'espadon' objects from Rdcm files
Rdcm.upgrade            Updating Rdcm files.
add.margin              Adding or removing a margin to a volume
add.shape               Adding shape to a 3D volume.
bin.closing             Binary volume closing
bin.clustering          Binary volume clustering
bin.cuboid              Create a volume containing predefined shapes
bin.dilation            Binary volume dilation
bin.erosion             Binary volume erosion
bin.from.roi            Creation of a binary volume according to RoI
bin.from.vol            Creation of a binary volume according to the
                        voxel values of a volume
bin.intersection        Intersection of two binaries
bin.inversion           Inversion of a binary
bin.opening             Binary volume opening
bin.subtraction         Subtraction of two binaries
bin.sum                 Sum of two binaries
castlow.str             Cast of a character string
castup.str              Cast of a character string
dicom.browser           DICOM raw data browser
dicom.parser            Conversion of DICOM raw data into a dataframe
                        or a list of DICOM TAG information
dicom.patient.anonymiser
                        Anonymisation of a patient's DICOM files
dicom.raw.data.anonymizer
                        DICOM anonymizer
dicom.raw.data.loader   DICOM file loading in raw data
dicom.set.tag.value     Change TAG value in DICOM raw data
dicom.tag.dictionary    DICOM TAG dictionary
dicom.tag.parser        DICOM TAG parser
dicom.to.Rdcm.converter
                        Conversion of DICOM object into files that can
                        be interpreted by the 'espadon' package
dicom.viewer            DICOM content viewer
display.2D.histo        Display of a 2D histogram
display.3D.contour      Display the 3D contours of the RoI
display.3D.mesh         3D display of a mesh
display.3D.sections     Display 3D sections of a patient
display.3D.stack        Display in 3D the selected planes of an
                        'espadon' class volume
display.DVH             Display of a DVH
display.DVH.pc          Display of a cumulative DVH in percent of total
                        volume
display.dV_dx           Display of the volume density of a histogram
display.histo           Display of the counts of a histogram
display.kplane          Display of a plane of a volume
display.legend          Display of the RoI legend
display.obj.links       Display patient objects links
display.palette         Display of the color scale of a color palette
display.plane           Display the transverse frontal or sagittal view
                        in the patient reference system
err.metrics.from.roi    Error evaluation metrics for 2-volume
                        comparisons
espadon.class           ESPADON class
export                  Export espadon objects in DICOM format
fan.beam                Creation of pyramid fan object with constant
                        angle step.
fan.planar              Creation of pyramid fan object passing through
                        pixels of a plane.
fan.sphere              Creation of spherical fan object.
fan.to.voxel            Indices of voxels crossed by a fan
get.extreme.pt          Coordinates of the extreme points
get.ijk.from.index      Conversion of the indices of a point into ijk
                        vector
get.ijk.from.xyz        Indices relating to the coordinates of the
                        points
get.line                Image value along an axis
get.obj.connection      List of connections between objects
get.plane               Extracting a plane from a volume
get.rigid.M             Transfer matrix between two frames of reference
get.roi.connection      List of inter-connections between RoI
get.value.from.ijk      Value of the volume at a selection of DICOM
                        indices
get.value.from.mesh     Voxel value at a given depth of a mesh
get.value.from.xyz      Voxel values on a selection of points
get.volume.from.bin     Volume selected by binary volume
get.volume.from.roi     Volume of a region of interest (RoI)
get.xyz.from.index      Conversion of the indices of a point, into xyz
                        coordinate vector in the patient's frame of
                        reference
grid.equal              Comparison of the grids of two volume objects
histo.2D                2D histograms of 2 volumes
histo.DVH               Cumulative Dose Volume Histogram
histo.from.bin          Histogram according to a binary
histo.from.roi          Histogram according to a RoI
histo.vol               Histogram of a volume
load.Rdcm.raw.data      Loading a *.Rdcm file
load.T.MAT              Loading of information about transfer matrices
                        between frames of reference of patient Rdcm
                        objects.
load.obj.data           Load data of an 'espadon' class object
load.obj.from.Rdcm      Loading an 'espadon' object from *.Rdcm file
load.obj.from.dicom     Loading an 'espadon' object from DICOM files or
                        folder
load.patient.from.Rdcm
                        Loading patient data from *.Rdcm files
load.patient.from.dicom
                        Loading patient data from DICOM files
mesh.from.bin           Creation of a mesh according to a binary volume
mesh.in.new.ref         Change of frame of reference of a mesh
mesh.repair             Repair of a mesh
mesh.spheric.proj       Adding spherical coordinates to a mesh
nesting.bin             Restrict volume to a binary selection
nesting.cube            Restriction of a volume to a rectangular
                        parallelepiped
nesting.roi             Restrict volume to RoI
obj.create              Espadon object creating
orientation.create      Creation of orientation
pal.RVV                 Conversion of Hounsfied Units to Realistic
                        Volume Vizualization colors
pal.rainbow             Rainbow palette
plot                    plot a 2D cut of a 3D object
ref.add                 Adding a frame of reference in T.MAT
ref.cutplane.add        Adding volume's cutting planes frame of
                        reference in T.MAT
ref.remove              Deletion of a frame of reference in T.MAT
ref.srctodest.add       Linking two existing frames of reference in
                        T.MAT
rt.chi.index            Chi index 2D - 3D
rt.gamma.index          Gamma index 2D - 3D
rt.indices.from.bin     Dosimetry, volume, conformity, homogeneity
                        indices from binary selection
rt.indices.from.roi     Dosimetry, volume, conformity, homogeneity
                        indices from RoI
save.T.MAT              Save a T.MAT class object
save.to.Rdcm            Save a 'espadon' object in a pre-formatted
                        *.Rdcm file
select.names            Regions of Interest (RoI) indices
set.reference.obj       Set the reference objects of a espadon object
sp.similarity.from.bin
                        Volume-based spatial similarity metrics
                        calculated from binary modality 3D volumes.
sp.similarity.from.mesh
                        Distance-based spatial similarity metrics
                        calculated from the mesh.
struct.clustering       Clustering volumes by RoI
struct.create           Struct creating from contours list
struct.from.bin         Creation of struct class object from a binary
                        volume
struct.from.mesh        Creation of struct class object from an espadon
                        mesh
struct.in.new.ref       Change of frame of reference of a "struct"
                        class object.
struct.merge            Merging of structures into a new structure
struct.update_roiinfo   Update roi.info
study.deployment        Deployment of DICOM files from multiple
                        patients
toy.dicom.raw           toy DICOM raw data
toy.load.patient        Load a toy patient for test
vector.product          Vector product of two vectors
vol.abserror            Absolute error volume
vol.copy                Creating a volume from another one
vol.create              Volume creating
vol.error               Error volume
vol.from.bin            Volume class object according to binary
                        selection
vol.gradient            Gradient of a volume
vol.in.new.ref          Change of frame of reference of a volume
vol.median              Median filter on a volume
vol.oversampling        Oversampling a volume
vol.regrid              Transform the grid of a volume class object
                        into the grid of another
vol.repair              repairing missing planes of volumes
vol.subsampling         Subsampling a volume
vol.sum                 Sum of 2 volumes
xlsx.from.Rdcm          Converting .Rdcm files to .xlsx files
xlsx.from.dcm           Converting DICOM files to .xlsx files
