AR2R0                   Title Calculate basic reproduction number from
                        attack rate
R02AR                   Title Calculate attack rate from basic
                        reproduction number
R02herd_immunity_threshold
                        Title Calculate herd immunity threshold from
                        basic reproduction number
clean_labels            Standardise labels
empirical_incubation_dist
                        Extract empirical incubation period
                        distribution from linelist data
fit_disc_gamma          Fit discretised distributions using ML
fit_gamma_incubation_dist
                        Fit discrite gamma distribution to incubation
                        periods
gamma_shapescale2mucv   Reparameterise Gamma distributions
hash_names              Anonymise data using scrypt
r2R0                    Transform a growth rate into a reproduction
                        number
sim_linelist            Simulate simple linelist data
