R: Small Helpers and Tricks for Epidemics Analysis

# Small Helpers and Tricks for Epidemics Analysis

## Documentation for package ‘epitrix’ version 0.4.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

AR2R0 | Title Calculate basic reproduction number from attack rate
clean_labels | Standardise labels
empirical_incubation_dist | Extract empirical incubation period distribution from linelist data
fit_discrete | Fit discretised distributions using ML
fit_disc_gamma | Fit discretised distributions using ML
fit_gamma_incubation_dist | Fit discrite gamma distribution to incubation periods
gamma_log_likelihood | Reparameterise Gamma distributions
gamma_mucv2shapescale | Reparameterise Gamma distributions
gamma_shapescale2mucv | Reparameterise Gamma distributions
hash_names | Anonymise data using scrypt
lm2R0_sample | Transform a growth rate into a reproduction number
R02AR | Title Calculate attack rate from basic reproduction number
R02herd_immunity_threshold | Title Calculate herd immunity threshold from basic reproduction number
r2R0 | Transform a growth rate into a reproduction number
sim_linelist | Simulate simple linelist data