R: Ensemble Taxonomic Assignments of Amplicon Sequencing Data

# Ensemble Taxonomic Assignments of Amplicon Sequencing Data

## Documentation for package ‘ensembleTax’ version 1.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

assign.ensembleTax | Computes ensemble taxonomic assignments for each ASV in an amplicon data set
bayes.sample | Example output of dada2 assignTaxonomy function
bayestax2df | Converts the output of DADA2's assignTaxonomy, which implements a naive bayesian classifier, into a dataframe compatible with the algorithms used in ensembleTax
gg_13_8_train_set_97 | All unique taxonomic assignments from the GreenGenes v13.8 clusted at 97%
idtax.pr2.sample | Example output of DECIPHER idtaxa function with pr2 taxonomy
idtax.silva.sample | Example output of DECIPHER idtaxa function with silva taxonomy
idtax2df | Converts outputs of DECIPHER's idtaxa algorithm into a dataframe compatible with the algorithms used in ensembleTax.
pr2v4.12.0 | All unique taxonomic assignments from the pr2 reference database v4.12.0
rdp_train_set_16 | All unique taxonomic assignments from the RDP Train Set 16
rubric.sample | Example rubric with ASV-identifying data
silva.nr.v138 | All unique taxonomic assignments from the Silva SSU nr database v138
sort_my_taxtab | Sorts taxonomy table by ASV-identifying columns.
synonyms_v2 | Taxonomic synonyms searched by the taxmapper algorithm
taxmapper | Maps an input taxonomy table onto a different taxonomic nomenclature.