R: Automated Analysis of 'QuPath' Output Data and Metadata Extraction

# Automated Analysis of 'QuPath' Output Data and Metadata Extraction

## Documentation for package ‘drugsens’ version 0.1.0

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

change_data_format_to_longer | Data format changer
data_binding | Merge all the dataframes coming out from the QuPath
generate_qupath_script | Generate the groovy script used for the analysis
get_QC_plots | Plot some QC plots to define that everything ran correctly
get_QC_plots_parsed_merged_data | Plot QC plots and calculate statistics for bound data
make_count_dataframe | Count the main marker expression
make_run_config | Generates and use a config txt file
string_parsing | Parse image filenames to extract metadata