R: Species Distribution Modeling

# Species Distribution Modeling

## Documentation for package ‘dismo’ version 1.3-16

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

dismo-package | Species distribution modeling
acaule | Solanum acaule data
Anguilla_grids | Anguilla australis distribution data
Anguilla_test | Anguilla australis distribution data
Anguilla_train | Anguilla australis distribution data
bioclim | Bioclim
Bioclim-class | Bioclim
bioclim-method | Bioclim
biovars | bioclimatic variables
biovars-method | bioclimatic variables
boxplot-method | Box plot of model evaluation data
calc.deviance | Calculate deviance
circleHull | Circle hull model
CircleHull-class | Circle hull model
circleHull-method | Circle hull model
circles | Circles range
circles-method | Circles range
CirclesRange-class | Circles range
ConvexHull-class | Convex hull model
convHull | Convex hull model
convHull-method | Convex hull model
dcEvaluate | Evaluate by distance class
density | density
density-method | density
dismo | Species distribution modeling
DistModel-class | Class "DistModel"
domain | Domain
Domain-class | Domain
domain-method | Domain
ecocrop | Ecocrop model
ECOCROP-class | Ecocrop model
ECOCROPcrop-class | Ecocrop model
ECOcrops | Ecocrop model
ecolim | Ecolim model
EcoLim-class | Ecolim model
ecolim-method | Ecolim model
evaluate | Model evaluation
evaluateROCR | Model testing with the ROCR package
gbif | Data from GBIF
gbm.fixed | gbm fixed
gbm.holdout | gbm holdout
gbm.interactions | gbm interactions
gbm.perspec | gbm perspective plot
gbm.plot | gbm plot
gbm.plot.fits | gbm plot fitted values
gbm.simplify | gbm simplify
gbm.step | gbm step
geocode | Georeferencing with Google
geoDist | Geographic distance model
geoDist-method | Geographic distance model
GeographicDistance-class | Geographic distance model
geoIDW | Inverse-distance weighted model
geoIDW-method | Inverse-distance weighted model
getCrop | Ecocrop model
gmap | Get a Google map
gridSample | Stratified regular sample on a grid
InvDistWeightModel-class | Inverse-distance weighted model
kfold | k-fold partitioning
mahal | Mahalanobis model
mahal-method | Mahalanobis model
Mahalanobis-class | Mahalanobis model
maxent | Maxent
MaxEnt-class | Maxent
maxent-method | Maxent
MaxEntReplicates-class | Maxent
Mercator | Get a Google map
mess | Multivariate environmental similarity surfaces (MESS)
ModelEvaluation-class | Class "ModelEvaluation"
nicheEquivalency | Niche equivalency
nicheOverlap | Niche overlap
nullRandom | Random null model
pairs | Pair plots
pairs-method | Pair plots
plot-method | Ecocrop model
plot-method | Ecolim model
plot-method | Plot predictor values
plot-method | Plot model evaluation data
points-method | Plot predictor values
pointValues | point values
predict | Distribution model predictions
predict-method | Ecolim model
predict-method | Distribution model predictions
prepareData | Prepare data for model fitting
pwdSample | Pair-wise distance sampling
randomPoints | Random points
RectangularHull-class | Rectangular hull model
rectHull | Rectangular hull model
rectHull-method | Rectangular hull model
response | response plots
response-method | response plots
ssb | Spatial sorting bias
threshold | Find a threshold
threshold-method | Find a threshold
voronoi | Voronoi polygons
voronoi-method | Voronoi polygons
voronoiHull | Voronoi hull model
VoronoiHull-class | Voronoi hull model
voronoiHull-method | Voronoi hull model