Package: denoiSeq
Type: Package
Title: Differential Expression Analysis Using a Bottom-Up Model
Version: 0.1.1
Authors@R: c(person("Gershom", "Buri", email = "buri@aims.edu.gh", role = c("aut","cre")),person("Wilfred", "Ndifon", email = "ndifon@gmail.com", role = "aut")) 
Description: Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of  a bottom-up model for PCR amplification. This model is  developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), <http://www.pnas.org/content/109/39/15865.full>, and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: methods, stats, utils
Suggests: knitr, rmarkdown
VignetteBuilder: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2018-01-31 20:03:47 UTC; buri
Author: Gershom Buri [aut, cre],
  Wilfred Ndifon [aut]
Maintainer: Gershom Buri <buri@aims.edu.gh>
Repository: CRAN
Date/Publication: 2018-01-31 20:26:31 UTC
Built: R 4.6.0; ; 2026-04-26 16:10:23 UTC; unix
