R: Differential Expression Analysis Using a Bottom-Up Model

# Differential Expression Analysis Using a Bottom-Up Model

## Documentation for package ‘denoiSeq’ version 0.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

denoiseq | Differential expression analysis using a bottom-up model
ERCC | ERCC dataset
getSamplesOf | Get posterior samples of a parameter
readsData | An S4 class to represent summarised counts and the output of Bayesian inference.
results | Compute the test statistic
setInitValues | Generic for altering the initValues slot
setInitValues-method | Generic for altering the initValues slot
setReplicates | Generic for the altering setReplicates slot.
setReplicates-method | Generic for the altering setReplicates slot.
setStepSizes | Generic for altering the stepSizes slot.
setStepSizes-method | Generic for altering the stepSizes slot.
simdat | simulated data
tunedStepSize | Get values of the tuned step sizes.