Encoding: UTF-8
Package: cytominer
Type: Package
Title: Methods for Image-Based Cell Profiling
Version: 0.2.2
Authors@R: c(person("Tim", "Becker", email = "tbecker@broadinstitute.org", role = "aut"),
    person("Allen", "Goodman", email = "allen.goodman@icloud.com", role = "aut"),
    person("Claire", "McQuin", email = "mcquin@broadinstitute.org", role = "aut"),
    person("Mohammad", "Rohban", email = "mrohban@broadinstitute.org", role = "aut"),
    person("Shantanu", "Singh", email = "shsingh@broadinstitute.org", role = c("aut", "cre"))
  )
Description: Typical morphological profiling datasets have millions of cells
    and hundreds of features per cell. When working with this data, you must
    clean the data, normalize the features to make them comparable across
    experiments, transform the features, select features based on their
    quality, and aggregate the single-cell data, if needed. 'cytominer' makes
    these steps fast and easy. Methods used in practice in the field are
    discussed in Caicedo (2017) <doi:10.1038/nmeth.4397>. An overview of the
    field is presented in Caicedo (2016) <doi:10.1016/j.copbio.2016.04.003>.
Depends: R (>= 3.3.0)
License: BSD_3_clause + file LICENSE
LazyData: TRUE
Imports: caret (>= 6.0.76), doParallel (>= 1.0.10), dplyr (>= 0.8.5),
        foreach (>= 1.4.3), futile.logger (>= 1.4.3), magrittr (>=
        1.5), Matrix (>= 1.2), purrr (>= 0.3.3), rlang (>= 0.4.5),
        tibble (>= 2.1.3), tidyr (>= 1.0.2)
Suggests: DBI (>= 0.7), dbplyr (>= 1.4.2), knitr (>= 1.17), lazyeval
        (>= 0.2.0), readr (>= 1.1.1), rmarkdown (>= 1.6), RSQLite (>=
        2.0), stringr (>= 1.2.0), testthat (>= 1.0.2)
VignetteBuilder: knitr
URL: https://github.com/cytomining/cytominer
BugReports: https://github.com/cytomining/cytominer/issues
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-09 03:40:43 UTC; shsingh
Author: Tim Becker [aut],
  Allen Goodman [aut],
  Claire McQuin [aut],
  Mohammad Rohban [aut],
  Shantanu Singh [aut, cre]
Maintainer: Shantanu Singh <shsingh@broadinstitute.org>
Repository: CRAN
Date/Publication: 2020-05-09 05:00:03 UTC
Built: R 4.6.0; ; 2026-04-30 09:42:17 UTC; unix
